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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G002983

染色体: Chr03 坐标: 46642713-46647351 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G002983
名称SmilChr03G002983
描述pentatricopeptide repeat-containing protein At5g64320, mitochondrial
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向46642713 - 46647351 / -

ID 对照

NCBI Gene IDLOC131016076
GeneID131016076
locus_tag-
NCBI NameLOC131016076
原始查询SmilChr03G002983

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At5g64320, mitochondrial
产物pentatricopeptide repeat-containing protein At5g64320%2C mitochondrial
ArabidopsisAT5G64320 (AT5G64320)
Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:836553]
identity=58.4; qcov=0.918; evalue=0; confidence=high
RiceOs10g0368902
-
identity=46.4; qcov=0.696; evalue=3.04e-166; confidence=high
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:131016076

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057800633.1
2 Chloroplast 叶绿体 0.20000 XP_057800633.1
3 Nucleus 细胞核 0.00000 XP_057800633.1
4 Chromosome 染色体 0.00000 XP_057800633.1
5 Centromere 着丝粒 0.00000 XP_057800633.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:46644318 C T EMS_canonical_SNV CDS_variant 4 A14,B50,C27,C33
Chr3:46644380 C T EMS_canonical_SNV CDS_variant 1 C13
Chr3:46644446 G A EMS_canonical_SNV CDS_variant 5 A15,B20,B4,B50,B60
Chr3:46644713 G A EMS_canonical_SNV CDS_variant 5 A10,A18,B133,B90,B92
Chr3:46644743 G A EMS_canonical_SNV CDS_variant 2 B95,C59
Chr3:46644766 C T EMS_canonical_SNV CDS_variant 5 B12,B123,B55,C37,C72
Chr3:46644767 G A EMS_canonical_SNV CDS_variant 2 C13,C48
Chr3:46644797 G A EMS_canonical_SNV CDS_variant 5 A10,A18,B133,B90,B92
Chr3:46644947 G A EMS_canonical_SNV CDS_variant 2 A6,C48
Chr3:46645064 C T EMS_canonical_SNV CDS_variant 5 A20,B94,B95,C59,C60
Chr3:46645067 C T EMS_canonical_SNV CDS_variant 2 B128,C77
Chr3:46645095 G A EMS_canonical_SNV CDS_variant 1 B76

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800633.1
728 aa
N
1
364
728
TPR_24
PPR
PPR_2
PPR_long
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_long
PPR_1
PPR_2
PPR
TPR_24
PPR_1
PPR_2
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_long
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
TPR_24
PPR_1
PPR
PPR_2
PPR_long
PPR_3
TPR_24
PPR_2
PPR
PPR_1
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
C
PF23276 TPR_24 195-306 aa PF01535 PPR 219-247 aa PF13041 PPR_2 222-261 aa PF17177 PPR_long 228-345 aa PF13812 PPR_3 237-297 aa PF12854 PPR_1 246-277 aa PF13041 PPR_2 249-298 aa PF01535 PPR 252-282 aa PF12854 PPR_1 280-312 aa PF13041 PPR_2 284-333 aa PF01535 PPR 288-317 aa PF12854 PPR_1 315-346 aa PF01535 PPR 322-346 aa PF12854 PPR_1 349-377 aa PF13041 PPR_2 350-400 aa PF01535 PPR 354-377 aa PF13812 PPR_3 377-432 aa PF17177 PPR_long 377-484 aa PF12854 PPR_1 383-415 aa PF13041 PPR_2 387-435 aa PF01535 PPR 389-419 aa PF23276 TPR_24 415-519 aa PF12854 PPR_1 417-450 aa PF13041 PPR_2 421-458 aa PF01535 PPR 424-454 aa PF23276 TPR_24 438-551 aa PF13812 PPR_3 445-500 aa PF12854 PPR_1 452-484 aa PF13041 PPR_2 457-505 aa PF01535 PPR 461-489 aa PF17177 PPR_long 469-613 aa PF12854 PPR_1 487-519 aa PF13041 PPR_2 491-538 aa PF01535 PPR 494-524 aa PF13812 PPR_3 515-572 aa PF12854 PPR_1 523-554 aa PF13041 PPR_2 527-574 aa PF01535 PPR 529-559 aa PF23276 TPR_24 556-658 aa PF12854 PPR_1 557-589 aa PF01535 PPR 564-594 aa PF13041 PPR_2 569-610 aa PF17177 PPR_long 578-682 aa PF13812 PPR_3 585-641 aa PF23276 TPR_24 590-682 aa PF13041 PPR_2 598-645 aa PF01535 PPR 600-629 aa PF12854 PPR_1 602-625 aa PF13812 PPR_3 620-680 aa PF12854 PPR_1 628-659 aa PF13041 PPR_2 631-680 aa PF01535 PPR 634-664 aa PF12854 PPR_1 663-692 aa PF13041 PPR_2 667-713 aa PF01535 PPR 669-696 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057800633.1 Pfam PF23276 TPR_24 Repeat 195 306 2.3e-41 141.5 Pentatricopeptide repeat-containing protein
XP_057800633.1 Pfam PF01535 PPR Repeat 219 247 6.7e-107 343.3 PPR repeat
XP_057800633.1 Pfam PF13041 PPR_2 Repeat 222 261 4.4e-167 542.9 PPR repeat family
XP_057800633.1 Pfam PF17177 PPR_long Repeat 228 345 1.1e-33 117.1 Pentacotripeptide-repeat region of PRORP
XP_057800633.1 Pfam PF13812 PPR_3 Repeat 237 297 1.9e-63 211.2 Pentatricopeptide repeat domain
XP_057800633.1 Pfam PF12854 PPR_1 Repeat 246 277 4.3e-143 465.4 PPR repeat
XP_057800633.1 Pfam PF13041 PPR_2 Repeat 249 298 4.4e-167 542.9 PPR repeat family
XP_057800633.1 Pfam PF01535 PPR Repeat 252 282 6.7e-107 343.3 PPR repeat
XP_057800633.1 Pfam PF12854 PPR_1 Repeat 280 312 4.3e-143 465.4 PPR repeat
XP_057800633.1 Pfam PF13041 PPR_2 Repeat 284 333 4.4e-167 542.9 PPR repeat family
XP_057800633.1 Pfam PF01535 PPR Repeat 288 317 6.7e-107 343.3 PPR repeat
XP_057800633.1 Pfam PF12854 PPR_1 Repeat 315 346 4.3e-143 465.4 PPR repeat
XP_057800633.1 Pfam PF01535 PPR Repeat 322 346 6.7e-107 343.3 PPR repeat
XP_057800633.1 Pfam PF12854 PPR_1 Repeat 349 377 4.3e-143 465.4 PPR repeat
XP_057800633.1 Pfam PF13041 PPR_2 Repeat 350 400 4.4e-167 542.9 PPR repeat family
XP_057800633.1 Pfam PF01535 PPR Repeat 354 377 6.7e-107 343.3 PPR repeat
XP_057800633.1 Pfam PF13812 PPR_3 Repeat 377 432 1.9e-63 211.2 Pentatricopeptide repeat domain
XP_057800633.1 Pfam PF17177 PPR_long Repeat 377 484 1.1e-33 117.1 Pentacotripeptide-repeat region of PRORP
XP_057800633.1 Pfam PF12854 PPR_1 Repeat 383 415 4.3e-143 465.4 PPR repeat
XP_057800633.1 Pfam PF13041 PPR_2 Repeat 387 435 4.4e-167 542.9 PPR repeat family
XP_057800633.1 Pfam PF01535 PPR Repeat 389 419 6.7e-107 343.3 PPR repeat
XP_057800633.1 Pfam PF23276 TPR_24 Repeat 415 519 2.3e-41 141.5 Pentatricopeptide repeat-containing protein
XP_057800633.1 Pfam PF12854 PPR_1 Repeat 417 450 4.3e-143 465.4 PPR repeat
XP_057800633.1 Pfam PF13041 PPR_2 Repeat 421 458 4.4e-167 542.9 PPR repeat family
XP_057800633.1 Pfam PF01535 PPR Repeat 424 454 6.7e-107 343.3 PPR repeat
XP_057800633.1 Pfam PF23276 TPR_24 Repeat 438 551 2.3e-41 141.5 Pentatricopeptide repeat-containing protein
XP_057800633.1 Pfam PF13812 PPR_3 Repeat 445 500 1.9e-63 211.2 Pentatricopeptide repeat domain
XP_057800633.1 Pfam PF12854 PPR_1 Repeat 452 484 4.3e-143 465.4 PPR repeat
XP_057800633.1 Pfam PF13041 PPR_2 Repeat 457 505 4.4e-167 542.9 PPR repeat family
XP_057800633.1 Pfam PF01535 PPR Repeat 461 489 6.7e-107 343.3 PPR repeat
XP_057800633.1 Pfam PF17177 PPR_long Repeat 469 613 1.1e-33 117.1 Pentacotripeptide-repeat region of PRORP
XP_057800633.1 Pfam PF12854 PPR_1 Repeat 487 519 4.3e-143 465.4 PPR repeat
XP_057800633.1 Pfam PF13041 PPR_2 Repeat 491 538 4.4e-167 542.9 PPR repeat family
XP_057800633.1 Pfam PF01535 PPR Repeat 494 524 6.7e-107 343.3 PPR repeat
XP_057800633.1 Pfam PF13812 PPR_3 Repeat 515 572 1.9e-63 211.2 Pentatricopeptide repeat domain
XP_057800633.1 Pfam PF12854 PPR_1 Repeat 523 554 4.3e-143 465.4 PPR repeat
XP_057800633.1 Pfam PF13041 PPR_2 Repeat 527 574 4.4e-167 542.9 PPR repeat family
XP_057800633.1 Pfam PF01535 PPR Repeat 529 559 6.7e-107 343.3 PPR repeat
XP_057800633.1 Pfam PF23276 TPR_24 Repeat 556 658 2.3e-41 141.5 Pentatricopeptide repeat-containing protein
XP_057800633.1 Pfam PF12854 PPR_1 Repeat 557 589 4.3e-143 465.4 PPR repeat
XP_057800633.1 Pfam PF01535 PPR Repeat 564 594 6.7e-107 343.3 PPR repeat
XP_057800633.1 Pfam PF13041 PPR_2 Repeat 569 610 4.4e-167 542.9 PPR repeat family
XP_057800633.1 Pfam PF17177 PPR_long Repeat 578 682 1.1e-33 117.1 Pentacotripeptide-repeat region of PRORP
XP_057800633.1 Pfam PF13812 PPR_3 Repeat 585 641 1.9e-63 211.2 Pentatricopeptide repeat domain
XP_057800633.1 Pfam PF23276 TPR_24 Repeat 590 682 2.3e-41 141.5 Pentatricopeptide repeat-containing protein
XP_057800633.1 Pfam PF13041 PPR_2 Repeat 598 645 4.4e-167 542.9 PPR repeat family
XP_057800633.1 Pfam PF01535 PPR Repeat 600 629 6.7e-107 343.3 PPR repeat
XP_057800633.1 Pfam PF12854 PPR_1 Repeat 602 625 4.3e-143 465.4 PPR repeat
XP_057800633.1 Pfam PF13812 PPR_3 Repeat 620 680 1.9e-63 211.2 Pentatricopeptide repeat domain
XP_057800633.1 Pfam PF12854 PPR_1 Repeat 628 659 4.3e-143 465.4 PPR repeat
XP_057800633.1 Pfam PF13041 PPR_2 Repeat 631 680 4.4e-167 542.9 PPR repeat family
XP_057800633.1 Pfam PF01535 PPR Repeat 634 664 6.7e-107 343.3 PPR repeat
XP_057800633.1 Pfam PF12854 PPR_1 Repeat 663 692 4.3e-143 465.4 PPR repeat
XP_057800633.1 Pfam PF13041 PPR_2 Repeat 667 713 4.4e-167 542.9 PPR repeat family
XP_057800633.1 Pfam PF01535 PPR Repeat 669 696 6.7e-107 343.3 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XR_009098843.1
AAAAATAGAAATTCTCCGCCCAAAGCTCTCTCTCTCACTCTCTCGCCTCTCGCTCGCCGCAGCCAGGATCGCTCCGCCCCTCCTTCGGCAGCAGCGCTGCAAGCCTGCAGCAGTCGGCCAGCTGCACCGCAACGCCAGCCCGGCAGACGGCAGTCCGCCTCTCCGGCTTCCGCGGCTCTGCCTCAGCGCTTCCGTCCGGCCTTCACTGCAGCAGAAAGCAGGGGGTTTATTGCTGCAACTGGAAATTGAGGATTATTGCC...
XR_009098842.1
AAAATAGAAATTCTCCGCCCAAAGCTCTCTCTCTCACTCTCTCGCCTCTCGCTCGCCGCAGCCAGGATCGCTCCGCCCCTCCTTCGGCAGCAGCGCTGCAAGCCTGCAGCAGTCGGCCAGCTGCACCGCAACGCCAGCCCGGCAGACGGCAGTCCGCCTCTCCGGCTTCCGCGGCTCTGCCTCAGCGCTTCCGTCCGGCCTTCACTGCAGCAGAAAGCAGGGGGTTTATTGCTGCAACTGGAAATTGAGGATTATTGCCA...

CDS

1 records

下载 CDS FASTA
LOC131016076
ATGCTCTCTAGAGTCATGATGAGATTAAAACCAAGTTTAGTTGATTTTCAAAAGCTTCACATATTCCCCAAGGCTTATATAGCTTCATGTTACTCGTGTGGCGCTTATGGAAGTTTTATTCATAGTAATGGTAATGATGGTTCGGGGGCAGAATCCGAGACTGAGTGGGAGATATTGCTTAAAACTTTTGACCTTGAGGAGCTGCGGAAGTCACTCAATAGAATCACTCCATTTCAGCTGAATAAGTTGCTGCAGCTCCC...

Protein

1 records

下载 Protein FASTA
XP_057800633.1
MLSRVMMRLKPSLVDFQKLHIFPKAYIASCYSCGAYGSFIHSNGNDGSGAESETEWEILLKTFDLEELRKSLNRITPFQLNKLLQLPLDVPTSMELFQWAGSQKGYRHTFDVYYTLVDKIGSANEFKTVDRLLLQMKEEGVSFQESIFIMIMRHYGRAGLPGQSTRLLFDMRSLFCYEPTFKSYNVVLDVLLAGNCPKIAPNVIYDMLSRGISPTVFTFARVMEALCMVNEVDSACSLLRDMTKHGCVPNSVVYQTLIHA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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