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TF 结合位点 TF 靶基因 EMS 突变
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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G002989

染色体: Chr03 坐标: 46707875-46711630 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G002989
名称SmilChr03G002989
描述putative pentatricopeptide repeat-containing protein At4g17915
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向46707875 - 46711630 / -

ID 对照

NCBI Gene IDLOC131016093
GeneID131016093
locus_tag-
NCBI NameLOC131016093
原始查询SmilChr03G002989

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述putative pentatricopeptide repeat-containing protein At4g17915
产物putative pentatricopeptide repeat-containing protein At4g17915
ArabidopsisAT5G46680 (AT5G46680)
Pentatricopeptide repeat (PPR-like) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:834711]
identity=47.1; qcov=0.98; evalue=4.7e-146; confidence=high
RiceOs02g0793200
-
identity=44.5; qcov=0.985; evalue=5.21e-134; confidence=medium
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long)
InterPro-
eggNOG-
NRGeneID:131016093

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057800653.1
2 Nucleus 细胞核 0.00000 XP_057800653.1
3 Chromosome 染色体 0.00000 XP_057800653.1
4 Centromere 着丝粒 0.00000 XP_057800653.1
5 Chromatin 染色质 0.00000 XP_057800653.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:46709536 G A EMS_canonical_SNV CDS_variant 2 C37,D7
Chr3:46709769 G A EMS_canonical_SNV CDS_variant 1 B79
Chr3:46709847 G A EMS_canonical_SNV CDS_variant 1 B31
Chr3:46709890 G A EMS_canonical_SNV CDS_variant 1 A3
Chr3:46710201 C T EMS_canonical_SNV CDS_variant 2 B104,C87
Chr3:46710312 C T EMS_canonical_SNV CDS_variant 1 C75
Chr3:46710457 C T EMS_canonical_SNV CDS_variant 2 C50,C83
Chr3:46710465 G A EMS_canonical_SNV CDS_variant 3 A13,C15,C20
Chr3:46710522 G A EMS_canonical_SNV CDS_variant 3 A13,C15,C20
Chr3:46710533 C T EMS_canonical_SNV CDS_variant 4 B118,B21,B52,C61
Chr3:46710597 G A EMS_canonical_SNV CDS_variant 2 C50,C83
Chr3:46710659 C T EMS_canonical_SNV CDS_variant 1 B101

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800653.1
459 aa
N
1
230
459
PPR_2
PPR_3
PPR_1
PPR_2
PPR
PPR_long
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_2
PPR
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR
PPR
C
PF13041 PPR_2 14-57 aa PF13812 PPR_3 38-87 aa PF12854 PPR_1 40-57 aa PF13041 PPR_2 43-89 aa PF01535 PPR 46-76 aa PF17177 PPR_long 60-156 aa PF13041 PPR_2 78-121 aa PF01535 PPR 81-111 aa PF13812 PPR_3 102-158 aa PF12854 PPR_1 109-140 aa PF13041 PPR_2 113-162 aa PF01535 PPR 117-145 aa PF12854 PPR_1 145-174 aa PF13041 PPR_2 148-197 aa PF01535 PPR 152-180 aa PF13812 PPR_3 172-230 aa PF13041 PPR_2 183-231 aa PF01535 PPR 186-216 aa PF01535 PPR 221-250 aa PF13812 PPR_3 242-298 aa PF12854 PPR_1 285-314 aa PF13041 PPR_2 289-337 aa PF01535 PPR 291-320 aa PF12854 PPR_1 319-352 aa PF01535 PPR 326-354 aa PF01535 PPR 362-383 aa PF01535 PPR 391-420 aa
XP_057800654.1
459 aa
N
1
230
459
PPR_2
PPR_3
PPR_1
PPR_2
PPR
PPR_long
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_2
PPR
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR
PPR
C
PF13041 PPR_2 14-57 aa PF13812 PPR_3 38-87 aa PF12854 PPR_1 40-57 aa PF13041 PPR_2 43-89 aa PF01535 PPR 46-76 aa PF17177 PPR_long 60-156 aa PF13041 PPR_2 78-121 aa PF01535 PPR 81-111 aa PF13812 PPR_3 102-158 aa PF12854 PPR_1 109-140 aa PF13041 PPR_2 113-162 aa PF01535 PPR 117-145 aa PF12854 PPR_1 145-174 aa PF13041 PPR_2 148-197 aa PF01535 PPR 152-180 aa PF13812 PPR_3 172-230 aa PF13041 PPR_2 183-231 aa PF01535 PPR 186-216 aa PF01535 PPR 221-250 aa PF13812 PPR_3 242-298 aa PF12854 PPR_1 285-314 aa PF13041 PPR_2 289-337 aa PF01535 PPR 291-320 aa PF12854 PPR_1 319-352 aa PF01535 PPR 326-354 aa PF01535 PPR 362-383 aa PF01535 PPR 391-420 aa
XP_057800655.1
459 aa
N
1
230
459
PPR_2
PPR_3
PPR_1
PPR_2
PPR
PPR_long
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_2
PPR
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR
PPR
C
PF13041 PPR_2 14-57 aa PF13812 PPR_3 38-87 aa PF12854 PPR_1 40-57 aa PF13041 PPR_2 43-89 aa PF01535 PPR 46-76 aa PF17177 PPR_long 60-156 aa PF13041 PPR_2 78-121 aa PF01535 PPR 81-111 aa PF13812 PPR_3 102-158 aa PF12854 PPR_1 109-140 aa PF13041 PPR_2 113-162 aa PF01535 PPR 117-145 aa PF12854 PPR_1 145-174 aa PF13041 PPR_2 148-197 aa PF01535 PPR 152-180 aa PF13812 PPR_3 172-230 aa PF13041 PPR_2 183-231 aa PF01535 PPR 186-216 aa PF01535 PPR 221-250 aa PF13812 PPR_3 242-298 aa PF12854 PPR_1 285-314 aa PF13041 PPR_2 289-337 aa PF01535 PPR 291-320 aa PF12854 PPR_1 319-352 aa PF01535 PPR 326-354 aa PF01535 PPR 362-383 aa PF01535 PPR 391-420 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057800653.1 Pfam PF13041 PPR_2 Repeat 14 57 5e-89 293.0 PPR repeat family
XP_057800653.1 Pfam PF13812 PPR_3 Repeat 38 87 9.1e-44 148.1 Pentatricopeptide repeat domain
XP_057800653.1 Pfam PF12854 PPR_1 Repeat 40 57 1.3e-71 236.7 PPR repeat
XP_057800653.1 Pfam PF13041 PPR_2 Repeat 43 89 5e-89 293.0 PPR repeat family
XP_057800653.1 Pfam PF01535 PPR Repeat 46 76 2.2e-61 200.6 PPR repeat
XP_057800653.1 Pfam PF17177 PPR_long Repeat 60 156 8e-16 58.8 Pentacotripeptide-repeat region of PRORP
XP_057800653.1 Pfam PF13041 PPR_2 Repeat 78 121 5e-89 293.0 PPR repeat family
XP_057800653.1 Pfam PF01535 PPR Repeat 81 111 2.2e-61 200.6 PPR repeat
XP_057800653.1 Pfam PF13812 PPR_3 Repeat 102 158 9.1e-44 148.1 Pentatricopeptide repeat domain
XP_057800653.1 Pfam PF12854 PPR_1 Repeat 109 140 1.3e-71 236.7 PPR repeat
XP_057800653.1 Pfam PF13041 PPR_2 Repeat 113 162 5e-89 293.0 PPR repeat family
XP_057800653.1 Pfam PF01535 PPR Repeat 117 145 2.2e-61 200.6 PPR repeat
XP_057800653.1 Pfam PF12854 PPR_1 Repeat 145 174 1.3e-71 236.7 PPR repeat
XP_057800653.1 Pfam PF13041 PPR_2 Repeat 148 197 5e-89 293.0 PPR repeat family
XP_057800653.1 Pfam PF01535 PPR Repeat 152 180 2.2e-61 200.6 PPR repeat
XP_057800653.1 Pfam PF13812 PPR_3 Repeat 172 230 9.1e-44 148.1 Pentatricopeptide repeat domain
XP_057800653.1 Pfam PF13041 PPR_2 Repeat 183 231 5e-89 293.0 PPR repeat family
XP_057800653.1 Pfam PF01535 PPR Repeat 186 216 2.2e-61 200.6 PPR repeat
XP_057800653.1 Pfam PF01535 PPR Repeat 221 250 2.2e-61 200.6 PPR repeat
XP_057800653.1 Pfam PF13812 PPR_3 Repeat 242 298 9.1e-44 148.1 Pentatricopeptide repeat domain
XP_057800653.1 Pfam PF12854 PPR_1 Repeat 285 314 1.3e-71 236.7 PPR repeat
XP_057800653.1 Pfam PF13041 PPR_2 Repeat 289 337 5e-89 293.0 PPR repeat family
XP_057800653.1 Pfam PF01535 PPR Repeat 291 320 2.2e-61 200.6 PPR repeat
XP_057800653.1 Pfam PF12854 PPR_1 Repeat 319 352 1.3e-71 236.7 PPR repeat
XP_057800653.1 Pfam PF01535 PPR Repeat 326 354 2.2e-61 200.6 PPR repeat
XP_057800653.1 Pfam PF01535 PPR Repeat 362 383 2.2e-61 200.6 PPR repeat
XP_057800653.1 Pfam PF01535 PPR Repeat 391 420 2.2e-61 200.6 PPR repeat
XP_057800654.1 Pfam PF13041 PPR_2 Repeat 14 57 5e-89 293.0 PPR repeat family
XP_057800654.1 Pfam PF13812 PPR_3 Repeat 38 87 9.1e-44 148.1 Pentatricopeptide repeat domain
XP_057800654.1 Pfam PF12854 PPR_1 Repeat 40 57 1.3e-71 236.7 PPR repeat
XP_057800654.1 Pfam PF13041 PPR_2 Repeat 43 89 5e-89 293.0 PPR repeat family
XP_057800654.1 Pfam PF01535 PPR Repeat 46 76 2.2e-61 200.6 PPR repeat
XP_057800654.1 Pfam PF17177 PPR_long Repeat 60 156 8e-16 58.8 Pentacotripeptide-repeat region of PRORP
XP_057800654.1 Pfam PF13041 PPR_2 Repeat 78 121 5e-89 293.0 PPR repeat family
XP_057800654.1 Pfam PF01535 PPR Repeat 81 111 2.2e-61 200.6 PPR repeat
XP_057800654.1 Pfam PF13812 PPR_3 Repeat 102 158 9.1e-44 148.1 Pentatricopeptide repeat domain
XP_057800654.1 Pfam PF12854 PPR_1 Repeat 109 140 1.3e-71 236.7 PPR repeat
XP_057800654.1 Pfam PF13041 PPR_2 Repeat 113 162 5e-89 293.0 PPR repeat family
XP_057800654.1 Pfam PF01535 PPR Repeat 117 145 2.2e-61 200.6 PPR repeat
XP_057800654.1 Pfam PF12854 PPR_1 Repeat 145 174 1.3e-71 236.7 PPR repeat
XP_057800654.1 Pfam PF13041 PPR_2 Repeat 148 197 5e-89 293.0 PPR repeat family
XP_057800654.1 Pfam PF01535 PPR Repeat 152 180 2.2e-61 200.6 PPR repeat
XP_057800654.1 Pfam PF13812 PPR_3 Repeat 172 230 9.1e-44 148.1 Pentatricopeptide repeat domain
XP_057800654.1 Pfam PF13041 PPR_2 Repeat 183 231 5e-89 293.0 PPR repeat family
XP_057800654.1 Pfam PF01535 PPR Repeat 186 216 2.2e-61 200.6 PPR repeat
XP_057800654.1 Pfam PF01535 PPR Repeat 221 250 2.2e-61 200.6 PPR repeat
XP_057800654.1 Pfam PF13812 PPR_3 Repeat 242 298 9.1e-44 148.1 Pentatricopeptide repeat domain
XP_057800654.1 Pfam PF12854 PPR_1 Repeat 285 314 1.3e-71 236.7 PPR repeat
XP_057800654.1 Pfam PF13041 PPR_2 Repeat 289 337 5e-89 293.0 PPR repeat family
XP_057800654.1 Pfam PF01535 PPR Repeat 291 320 2.2e-61 200.6 PPR repeat
XP_057800654.1 Pfam PF12854 PPR_1 Repeat 319 352 1.3e-71 236.7 PPR repeat
XP_057800654.1 Pfam PF01535 PPR Repeat 326 354 2.2e-61 200.6 PPR repeat
XP_057800654.1 Pfam PF01535 PPR Repeat 362 383 2.2e-61 200.6 PPR repeat
XP_057800654.1 Pfam PF01535 PPR Repeat 391 420 2.2e-61 200.6 PPR repeat
XP_057800655.1 Pfam PF13041 PPR_2 Repeat 14 57 5e-89 293.0 PPR repeat family
XP_057800655.1 Pfam PF13812 PPR_3 Repeat 38 87 9.1e-44 148.1 Pentatricopeptide repeat domain
XP_057800655.1 Pfam PF12854 PPR_1 Repeat 40 57 1.3e-71 236.7 PPR repeat
XP_057800655.1 Pfam PF13041 PPR_2 Repeat 43 89 5e-89 293.0 PPR repeat family
XP_057800655.1 Pfam PF01535 PPR Repeat 46 76 2.2e-61 200.6 PPR repeat
XP_057800655.1 Pfam PF17177 PPR_long Repeat 60 156 8e-16 58.8 Pentacotripeptide-repeat region of PRORP
XP_057800655.1 Pfam PF13041 PPR_2 Repeat 78 121 5e-89 293.0 PPR repeat family
XP_057800655.1 Pfam PF01535 PPR Repeat 81 111 2.2e-61 200.6 PPR repeat
XP_057800655.1 Pfam PF13812 PPR_3 Repeat 102 158 9.1e-44 148.1 Pentatricopeptide repeat domain
XP_057800655.1 Pfam PF12854 PPR_1 Repeat 109 140 1.3e-71 236.7 PPR repeat
XP_057800655.1 Pfam PF13041 PPR_2 Repeat 113 162 5e-89 293.0 PPR repeat family
XP_057800655.1 Pfam PF01535 PPR Repeat 117 145 2.2e-61 200.6 PPR repeat
XP_057800655.1 Pfam PF12854 PPR_1 Repeat 145 174 1.3e-71 236.7 PPR repeat
XP_057800655.1 Pfam PF13041 PPR_2 Repeat 148 197 5e-89 293.0 PPR repeat family
XP_057800655.1 Pfam PF01535 PPR Repeat 152 180 2.2e-61 200.6 PPR repeat
XP_057800655.1 Pfam PF13812 PPR_3 Repeat 172 230 9.1e-44 148.1 Pentatricopeptide repeat domain
XP_057800655.1 Pfam PF13041 PPR_2 Repeat 183 231 5e-89 293.0 PPR repeat family
XP_057800655.1 Pfam PF01535 PPR Repeat 186 216 2.2e-61 200.6 PPR repeat
XP_057800655.1 Pfam PF01535 PPR Repeat 221 250 2.2e-61 200.6 PPR repeat
XP_057800655.1 Pfam PF13812 PPR_3 Repeat 242 298 9.1e-44 148.1 Pentatricopeptide repeat domain
XP_057800655.1 Pfam PF12854 PPR_1 Repeat 285 314 1.3e-71 236.7 PPR repeat
XP_057800655.1 Pfam PF13041 PPR_2 Repeat 289 337 5e-89 293.0 PPR repeat family
XP_057800655.1 Pfam PF01535 PPR Repeat 291 320 2.2e-61 200.6 PPR repeat
XP_057800655.1 Pfam PF12854 PPR_1 Repeat 319 352 1.3e-71 236.7 PPR repeat
XP_057800655.1 Pfam PF01535 PPR Repeat 326 354 2.2e-61 200.6 PPR repeat
XP_057800655.1 Pfam PF01535 PPR Repeat 362 383 2.2e-61 200.6 PPR repeat
XP_057800655.1 Pfam PF01535 PPR Repeat 391 420 2.2e-61 200.6 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057944671.1
TGAAACTAAACAATGAAGCGAAGGATCCTTTTCCTCTCAACTATCTATCTACCTTAACCTATCGGCCATGGGCGTCTCTCTCTACTCTTCCAATATAAGTATGTCGAAGCTGATGGATGCAGAATCACATTGATGTAGTGCTAATTGTGATTGGTTGTATGATGAAACGCTTATTTGGTTTTGTGCCACATCATCCTTGTCCTCGTTGTAGTATGACTATGTTGAAAAGCTGATTATCATGAGTGGGGAAGATTGGCAGG...
XM_057944672.1
TGAAACTAAACAATGAAGCGAAGGATCCTTTTCCTCTCAACTATCTATCTACCTTAACCTATCGGCCATGGGCGTCTCTCTCTACTCTTCCAATATAAGTATGTCGAAGCTGATGGATGCAGAATCACATTGGTATGCAGCGGCTGACTTTCTCTGGATGTAGTGCTAATTGTGATTGGTTGTATGATGAAACGCTTATTTGGTTTTGTGCCACATCATCCTTGTCCTCGTTGTAGTATGACTATGTTGAAAAGCTGATT...

CDS

3 records

下载 CDS FASTA
LOC131016093
ATGAGGAGAATGTGCCTCAGACTATCGACTAAGTTGTTGAATATATCCGTAGCATCCCTTTGTAGAACCAGACAATTGGAGAAGGCTGAAGCTGCTCTTATTGATGGAATAAGATTGGGAGTGCTACCGGATGTAGTGACCTATAACATTTTGATAACGGGGTATTGCCAATTTGTTGGGTTCGATGCAGGTTACCATGTCATTCACCGAATGAAGGAGGCTGGGATAAGCCCGAATCTTGTTACCTATAATTCTTTGAT...
LOC131016093
ATGAGGAGAATGTGCCTCAGACTATCGACTAAGTTGTTGAATATATCCGTAGCATCCCTTTGTAGAACCAGACAATTGGAGAAGGCTGAAGCTGCTCTTATTGATGGAATAAGATTGGGAGTGCTACCGGATGTAGTGACCTATAACATTTTGATAACGGGGTATTGCCAATTTGTTGGGTTCGATGCAGGTTACCATGTCATTCACCGAATGAAGGAGGCTGGGATAAGCCCGAATCTTGTTACCTATAATTCTTTGAT...

Protein

3 records

下载 Protein FASTA
XP_057800653.1
MRRMCLRLSTKLLNISVASLCRTRQLEKAEAALIDGIRLGVLPDVVTYNILITGYCQFVGFDAGYHVIHRMKEAGISPNLVTYNSLMAGATRQHSLACCLDMLDEMLDRGIVPDIWSYNTLMHCFFRMGRPYDAYRIFSEILLKNISPCQATYNILINGLCKNGYIKNALMLFRNLQHQGYVPQIVTYNILMTSLCKLRRWKAIMRLFEEIRELGIAPNAITYTTAMKCCFRSRRYKEGLQIFFEMKSRGYAYDLFACCT...
XP_057800654.1
MRRMCLRLSTKLLNISVASLCRTRQLEKAEAALIDGIRLGVLPDVVTYNILITGYCQFVGFDAGYHVIHRMKEAGISPNLVTYNSLMAGATRQHSLACCLDMLDEMLDRGIVPDIWSYNTLMHCFFRMGRPYDAYRIFSEILLKNISPCQATYNILINGLCKNGYIKNALMLFRNLQHQGYVPQIVTYNILMTSLCKLRRWKAIMRLFEEIRELGIAPNAITYTTAMKCCFRSRRYKEGLQIFFEMKSRGYAYDLFACCT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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