当前解析结果
SmilChr03G002996| 统一新 Gene ID | SmilChr03G002996 |
|---|---|
| 名称 | SmilChr03G002996 |
| 描述 | probable L-type lectin-domain containing receptor kinase S.7 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 46773343 - 46775789 / - |
| NCBI Gene ID | LOC131016150 |
|---|---|
| GeneID | 131016150 |
| locus_tag | - |
| NCBI Name | LOC131016150 |
| 原始查询 | SmilChr03G002996 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable L-type lectin-domain containing receptor kinase S.7 |
| 产物 | probable L-type lectin-domain containing receptor kinase S.7 |
| Arabidopsis | AT5G55830 (AT5G55830)Concanavalin A-like lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:835677] identity=30.1; qcov=0.93; evalue=2.05e-82; confidence=low |
| Rice | Os06g0285400- identity=31.2; qcov=0.992; evalue=3.27e-80; confidence=low |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation); GO:0030246 (carbohydrate binding) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00139 (Lectin_legB); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016150 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057800745.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057800745.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057800745.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057800745.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057800745.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:46773694 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C38 |
Chr3:46773933 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B49,C45 |
Chr3:46774093 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr3:46774151 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr3:46774372 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B16,B46,B48,B85,B94 |
Chr3:46774401 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr3:46774528 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B27,B75,C33,C55 |
Chr3:46774584 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr3:46774666 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B134 |
Chr3:46774846 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C64 |
Chr3:46774883 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B118 |
Chr3:46774968 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C39 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057800745.1PF00139
Lectin_legB 34-269 aa
PF00069
Pkinase 365-516 aa
PF07714
PK_Tyr_Ser-Thr 365-604 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057800745.1 |
Pfam | PF00139 |
Lectin_legB | Domain | 34 | 269 | 2e-58 | 198.6 | Legume lectin domain |
XP_057800745.1 |
Pfam | PF00069 |
Pkinase | Domain | 365 | 516 | 7.9e-21 | 75.3 | Protein kinase domain |
XP_057800745.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 365 | 604 | 1.2e-21 | 77.9 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。