Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G002996

染色体: Chr03 坐标: 46773343-46775789 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G002996
名称SmilChr03G002996
描述probable L-type lectin-domain containing receptor kinase S.7
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向46773343 - 46775789 / -

ID 对照

NCBI Gene IDLOC131016150
GeneID131016150
locus_tag-
NCBI NameLOC131016150
原始查询SmilChr03G002996

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述probable L-type lectin-domain containing receptor kinase S.7
产物probable L-type lectin-domain containing receptor kinase S.7
ArabidopsisAT5G55830 (AT5G55830)
Concanavalin A-like lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:835677]
identity=30.1; qcov=0.93; evalue=2.05e-82; confidence=low
RiceOs06g0285400
-
identity=31.2; qcov=0.992; evalue=3.27e-80; confidence=low
GOGO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation); GO:0030246 (carbohydrate binding)
KEGG-
PfamPF00069 (Pkinase); PF00139 (Lectin_legB); PF07714 (PK_Tyr_Ser-Thr)
InterPro-
eggNOG-
NRGeneID:131016150

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057800745.1
2 Nucleus 细胞核 0.00000 XP_057800745.1
3 Chromosome 染色体 0.00000 XP_057800745.1
4 Centromere 着丝粒 0.00000 XP_057800745.1
5 Chromatin 染色质 0.00000 XP_057800745.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:46773694 G A EMS_canonical_SNV CDS_variant 1 C38
Chr3:46773933 C T EMS_canonical_SNV CDS_variant 2 B49,C45
Chr3:46774093 C T EMS_canonical_SNV CDS_variant 1 B2
Chr3:46774151 C T EMS_canonical_SNV CDS_variant 1 B69
Chr3:46774372 C T EMS_canonical_SNV CDS_variant 5 B16,B46,B48,B85,B94
Chr3:46774401 C T EMS_canonical_SNV CDS_variant 1 C60
Chr3:46774528 G A EMS_canonical_SNV CDS_variant 4 B27,B75,C33,C55
Chr3:46774584 C T EMS_canonical_SNV CDS_variant 1 B2
Chr3:46774666 G A EMS_canonical_SNV CDS_variant 1 B134
Chr3:46774846 G A EMS_canonical_SNV CDS_variant 1 C64
Chr3:46774883 G A EMS_canonical_SNV CDS_variant 1 B118
Chr3:46774968 C T EMS_canonical_SNV CDS_variant 1 C39

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057800745.1
642 aa
N
1
321
642
Lectin_legB
Pkinase
PK_Tyr_Ser-Thr
C
PF00139 Lectin_legB 34-269 aa PF00069 Pkinase 365-516 aa PF07714 PK_Tyr_Ser-Thr 365-604 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057800745.1 Pfam PF00139 Lectin_legB Domain 34 269 2e-58 198.6 Legume lectin domain
XP_057800745.1 Pfam PF00069 Pkinase Domain 365 516 7.9e-21 75.3 Protein kinase domain
XP_057800745.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 365 604 1.2e-21 77.9 Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057944762.1
CAACTTATAATCTCTTAAAAATTACATCTTATAAGTTCAAAGAGCTTATAATAAGCTTTTAAAATAAGCTTAGCCAAACACCCTCTTATAAACCAAATGCAAAACTGATAAAAAAAATGAAAAAAATCAGTAAACTTTATGTTATAAATTCTGTGAAAATAATTTGTAGGACCACATTACTAAAACACCATACGTGTCTTTCTCTGATGACCATGTAAATACAAAATCCACCATAGAGTAAAAACCAACATTCTTCTTCT...

CDS

1 records

下载 CDS FASTA
LOC131016150
ATGTTTTTCCTCATCTTATCAATCATCCTATCCTCCACGCTCCCAAACCCAGCCCAATCCTCGCACAAGCCCGGGCCCGAAATCAGCCTGACAAAGCGCCTCTCCTTCCCAAATTTCGGGCCGAACAACATCAACCAAGACCTCACACTCTTAGGCAGCGCCGCAATCCCATCCGAAACGGGCTGCATCCAAATCCCCCAACCCAATCTCCGATCCTCCGCCGGGAGAGCAATCTACTCCTCCCCCGTCCGCCTCTTCGA...

Protein

1 records

下载 Protein FASTA
XP_057800745.1
MFFLILSIILSSTLPNPAQSSHKPGPEISLTKRLSFPNFGPNNINQDLTLLGSAAIPSETGCIQIPQPNLRSSAGRAIYSSPVRLFDPTSRLPASFQTTFSFRIQDRSNGSGGPGLSFVVVPDELTVGRPGPWLGMLNDACEDEYKVFAVELDTRMNPEFGDPNDNHVGINLGSIVSTTVINASRFGVRLNDGTLHRAWIAYHGSNKSLEISLGPDAEPRPTTGVYSANLDLSPYLNEYMFIGFSGSSGDDYHTQIHSVC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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