Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003010`

染色体: Chr03 坐标: 46940075-46962335 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003010`
名称	SmilChr03G003010
描述	uncharacterized SmilChr03G003010
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	46940075 - 46962335 / `-`

ID 对照

NCBI Gene ID	`LOC131016160`
GeneID	`131016160`
locus_tag	`-`
NCBI Name	`LOC131016160`
原始查询	`SmilChr03G003010`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	N-acetylglucosaminyl transferase component family protein / Gpi1 family protein [Source:NCBI gene (formerly Entrezgene);Acc:824884]; symbol=AT3G57170; hit=AT3G57170; species=arabidopsis; confidence=medium
产物	N-acetylglucosaminyl transferase component family protein / Gpi1 family protein [Source:NCBI gene (formerly Entrezgene);Acc:824884]; symbol=AT3G57170; hit=AT3G57170; species=arabidopsis; confidence=medium
Arabidopsis	`AT3G57170` (AT3G57170) N-acetylglucosaminyl transferase component family protein / Gpi1 family protein [Source:NCBI gene (formerly Entrezgene);Acc:824884] identity=44.7; qcov=0.754; evalue=4.34e-138; confidence=medium
Rice	`Os05g0290300` - identity=47.9; qcov=0.291; evalue=2.13e-50; confidence=weak
GO	GO:0006506 (GPI anchor biosynthetic process); GO:0016020 (membrane)
KEGG	smil00563 (Glycosylphosphatidylinositol (GPI)-anchor biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF05024 (Gpi1)
InterPro	-
eggNOG	-
NR	GeneID:131016160

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057800757.1`
2	Endoplasmic reticulum membrane	内质网膜	0.80000	`XP_057800757.1`
3	Nucleus membrane	核膜	0.20000	`XP_057800757.1`
4	Nucleus	细胞核	0.00000	`XP_057800757.1`
5	Chromosome	染色体	0.00000	`XP_057800757.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:46940325`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr3:46940570`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B42,B43,B76,C47
`Chr3:46940595`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B20,B33,B50,B60
`Chr3:46940856`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B12,B123,B55,C37
`Chr3:46940907`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B9
`Chr3:46940916`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B140,D7
`Chr3:46940941`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A14,B50,C33
`Chr3:46941069`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B12,B123,B55,C37
`Chr3:46941810`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B12,B123,B55,C37
`Chr3:46943401`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B76,C47
`Chr3:46943613`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B95
`Chr3:46943642`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B140,D11,D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800757.1

724 aa

362

724

Gpi1

PF05024 Gpi1 320-592 aa

XP_057800758.1

724 aa

362

724

Gpi1

PF05024 Gpi1 320-592 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800757.1`	Pfam	`PF05024`	Gpi1	Family	320	592	1.2e-74	251.9	N-acetylglucosaminyl transferase component (Gpi1)
`XP_057800758.1`	Pfam	`PF05024`	Gpi1	Family	320	592	1.2e-74	251.9	N-acetylglucosaminyl transferase component (Gpi1)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057944775.1
TCTTTGTCAAGCCCACAAACCGCTCACTGCTCTCTCTCGAACTGTCATTCAGCAATTGTCGCCGCCGCTGACGTGCACACCATCATCTCCCTAGCCTCACGCCCTCTGTCTTGCTTCATCTGTCTCTATCCTTGTTACAGAACACCCACACACCAAACACAAACCTTTCTTTACGAATTTTCCGGCGATATCCGCCATTTAACGTCGTGCTCCACTGCTCTGTTGCTGCAACAACACGCCGCCGACTCTGTTTATCCCCA...

XM_057944774.1
TCTTTGTCAAGCCCACAAACCGCTCACTGCTCTCTCTCGAACTGTCATTCAGCAATTGTCGCCGCCGCTGACGTGCACACCATCATCTCCCTAGCCTCACGCCCTCTGTCTTGCTTCATCTGTCTCTATCCTTGTTACAGAACACCCACACACCAAACACAAACCTTTCTTTACGAATTTTCCGGCGATATCCGCCATTTAACGTCGTGCTCCACTGCTCTGTTGCTGCAACAACACGCCGCCGACTCTGTTTATCCCCA...

CDS

2 records

下载 CDS FASTA

LOC131016160
ATGGCAAGGAGAAGGAATTGCAGGCTTTGGTGGCCGGCTGATCTCTTCTCTCAAACTCCACCGGGTTTAAGTTTCTTATTTGGATGGTTCCTTCCCTCTTCCGAAGCTTCCATCGATGTTGTCGTGGCTTTCGCTTGCCATCAGCACAAACTTGCTTCTTCACTTGAATCCGGTTTGGATCTCATGGAAATCCTTCATAGGACGAACAAGAACATGCCTACACTTCTTCAAGAGAAAAGCGGCTTCTCTCTTCTGGGATA...

Protein

2 records

下载 Protein FASTA

XP_057800757.1
MARRRNCRLWWPADLFSQTPPGLSFLFGWFLPSSEASIDVVVAFACHQHKLASSLESGLDLMEILHRTNKNMPTLLQEKSGFSLLGYFEADCSGNNKLANCGNDRNGDMKLNGNQSSSSLVSNQGSWSCGCLRHDSILGHGRLAAPENLSIKLVYVLSERMDGRVLAIPKLDHLHLNGKIESHLDLHVIFYEIPNIGGHHYSLGAHFSSNLVASPSKKPKWFEDLHQRDSHLDLDIVIQAMNSANAAQILFDGHDHAESG...

XP_057800758.1
MARRRNCRLWWPADLFSQTPPGLSFLFGWFLPSSEASIDVVVAFACHQHKLASSLESGLDLMEILHRTNKNMPTLLQEKSGFSLLGYFEADCSGNNKLANCGNDRNGDMKLNGNQSSSSLVSNQGSWSCGCLRHDSILGHGRLAAPENLSIKLVYVLSERMDGRVLAIPKLDHLHLNGKIESHLDLHVIFYEIPNIGGHHYSLGAHFSSNLVASPSKKPKWFEDLHQRDSHLDLDIVIQAMNSANAAQILFDGHDHAESG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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