Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003019`

染色体: Chr03 坐标: 47097084-47102284 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003019`
名称	SmilChr03G003019
描述	uncharacterized SmilChr03G003019
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	47097084 - 47102284 / `-`

ID 对照

NCBI Gene ID	`LOC131016168`
GeneID	`131016168`
locus_tag	`-`
NCBI Name	`LOC131016168`
原始查询	`SmilChr03G003019`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	actin protein 2/3 complex subunit-like protein [Source:NCBI gene (formerly Entrezgene);Acc:817359]; symbol=AT2G28130; hit=AT2G28130; species=arabidopsis; confidence=high
产物	actin protein 2/3 complex subunit-like protein [Source:NCBI gene (formerly Entrezgene);Acc:817359]; symbol=AT2G28130; hit=AT2G28130; species=arabidopsis; confidence=high
Arabidopsis	`AT2G28130` (AT2G28130) actin protein 2/3 complex subunit-like protein [Source:NCBI gene (formerly Entrezgene);Acc:817359] identity=46.4; qcov=0.989; evalue=2.96e-131; confidence=high
Rice	`Os01g0241100` - identity=43; qcov=0.998; evalue=1.25e-113; confidence=medium
GO	-
KEGG	-
Pfam	PF14816 (CANIN)
InterPro	-
eggNOG	-
NR	GeneID:131016168

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057800778.1`
2	Chromosome	染色体	0.40000	`XP_057800778.1`
3	Nucleoplasm	核质	0.40000	`XP_057800778.1`
4	Centromere	着丝粒	0.00000	`XP_057800778.1`
5	Chromatin	染色质	0.00000	`XP_057800778.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:47097766`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B76
`Chr3:47097838`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B33,B87
`Chr3:47097841`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B33,B87
`Chr3:47097953`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C75
`Chr3:47098944`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B33,B87
`Chr3:47099139`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr3:47099804`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B140,C48
`Chr3:47100585`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C13
`Chr3:47100632`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B33,B87
`Chr3:47100871`	`GAT`	`G`	2bp_deletion	frameshift_variant	1	B76
`Chr3:47100871`	`GAT`	`G`	2bp_deletion	CDS_variant	1	B76
`Chr3:47102021`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B18,B85

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800778.1

464 aa

232

464

CANIN

PF14816 CANIN 32-373 aa

XP_057800779.1

462 aa

231

462

CANIN

PF14816 CANIN 32-371 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800778.1`	Pfam	`PF14816`	CANIN	Domain	32	373	5e-08	33.1	Coiled-coil and Nse Interacting (CANIN) domain
`XP_057800779.1`	Pfam	`PF14816`	CANIN	Domain	32	371	8.7e-08	32.4	Coiled-coil and Nse Interacting (CANIN) domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057944795.1
GGATTTGGGGTTTGCAACCCATAGCAAATAAAAGGGTTAAAGCCCGCCCGGCCCAAAAGCCAGTTTCCCCCTTCTTCTAGTTCTAATATTGGCGCTCACAATTTTCAAGCCATCACTCGCCGGCGCCAATTCCAACTGCGCTTTAGAGAGAGAGAGAGAGAGAGAAACATCGTTCGTATCCGTGTCTGTGCCAGGGAGAAGAAACAAATGGCGGACGCTTGTGATCCGCTCGACTTTGAGTTTGAAGAGCCCATTCAGTT...

XM_057944796.1
ACAATTTTCAAGCCATCACTCGCCGGCGCCAATTCCAACTGCGCTTTAGAGAGAGAGAGAGAGAGAGAAACATCGTTCGTATCCGTGTCTGTGCCAGGGAGAAGAAACAAATGGCGGACGCTTGTGATCCGCTCGACTTTGAGTTTGAAGAGCCCATTCAGTTTTCCCCTCCTCCACCGAAGAAAAAGAAGAAACTTATTGGGTTGGATGATCTCTTGAATGATATCCAGAAAGAGCAAAAGAGGCTTGATGAGAAAAAA...

CDS

2 records

下载 CDS FASTA

LOC131016168
ATGGCGGACGCTTGTGATCCGCTCGACTTTGAGTTTGAAGAGCCCATTCAGTTTTCCCCTCCTCCACCGAAGAAAAAGAAGAAACTTATTGGGTTGGATGATCTCTTGAATGATATCCAGAAAGAGCAAAAGAGGCTTGATGAGAAAAAAATCAAACAAAAGAAGGGCCGAAAGATTTTTGATGCAGATGACGATGATGAGGATGCTGAAGAGGCGCTACTATCAGAATGTGTTGACAAGTGCGAGCAAGAGATAAATCG...

Protein

2 records

下载 Protein FASTA

XP_057800778.1
MADACDPLDFEFEEPIQFSPPPPKKKKKLIGLDDLLNDIQKEQKRLDEKKIKQKKGRKIFDADDDDEDAEEALLSECVDKCEQEINRINGDEQMPFWGIQVFGDQEKLPQQEHPELKSSAFMQSFTKQKINPLLELNIEKGEDFLEGLLADGWLLHLVRTSGCVEKSIATWTFNLMLYSSKMWLMQAACDFWSAILSIRDKADTSSFKIDWLPRYSDLKRALQTYGFLFDSSPKSSSDIEMDSSDSITAGPPQNIRCWIK...

XP_057800779.1
MADACDPLDFEFEEPIQFSPPPPKKKKKLIGLDDLLNDIQKEQKRLDEKKIKQKKGRKIFDADDDDEDAEEALLSECVDKCEQEINRINGDEQMPFWGIQVFGDQLPQQEHPELKSSAFMQSFTKQKINPLLELNIEKGEDFLEGLLADGWLLHLVRTSGCVEKSIATWTFNLMLYSSKMWLMQAACDFWSAILSIRDKADTSSFKIDWLPRYSDLKRALQTYGFLFDSSPKSSSDIEMDSSDSITAGPPQNIRCWIKFV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器