当前解析结果
SmilChr03G003026| 统一新 Gene ID | SmilChr03G003026 |
|---|---|
| 名称 | SmilChr03G003026 |
| 描述 | uncharacterized SmilChr03G003026 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 47158180 - 47160948 / - |
| NCBI Gene ID | LOC131018902 |
|---|---|
| GeneID | 131018902 |
| locus_tag | - |
| NCBI Name | LOC131018902 |
| 原始查询 | SmilChr03G003026 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0125300; species=rice; confidence=low |
| 产物 | hit=Os08g0125300; species=rice; confidence=low |
| Arabidopsis | AT4G05360 (AT4G05360)Zinc knuckle (CCHC-type) family protein [Source:NCBI gene (formerly Entrezgene);Acc:825884] identity=25.9; qcov=0.389; evalue=2.49e-17; confidence=low |
| Rice | Os08g0125300- identity=30.9; qcov=0.358; evalue=1.3e-43; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0008270 (zinc ion binding); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00665 (rve); PF13976 (gag_pre-integrs); PF14223 (Retrotran_gag_2); PF22936 (Pol_BBD) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018902 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057803576.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057803576.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057803576.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057803576.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057803576.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:47158241 |
GA |
G |
1bp_deletion | frameshift_variant | 15 | A4,B100,B106,B119,B127,B128,B136,B138,B139,B22,B37,B69,C32,C73,C9 |
Chr3:47158242 |
A |
AG |
1bp_insertion | frameshift_variant | 10 | A10,B114,B118,B122,B48,B99,C50,C64,C66,C83 |
Chr3:47158244 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B67 |
Chr3:47158248 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr3:47158252 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B35,C32,C68 |
Chr3:47158255 |
C |
T |
EMS_canonical_SNV | stop_gained | 39 | A11,A15,A16,A2,A4,A8,A9,B1,B10,B103,B106,B107,B118,B130,B137,B19,B24,B32,B33,B39,B54,B6,B63,B70,B76,B97,C12,C17,C19,C20,C27,C34,C35,C37,C53,C63,C75,D1,D9 |
Chr3:47158261 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B35,C32,C68 |
Chr3:47158278 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B93,C53 |
Chr3:47158278 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B93,C53 |
Chr3:47158288 |
CG |
C |
1bp_deletion | frameshift_variant | 5 | A13,B31,B42,B43,B88 |
Chr3:47158288 |
CG |
C |
1bp_deletion | CDS_variant | 5 | A13,B31,B42,B43,B88 |
Chr3:47158293 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A5,B23,B73 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803576.1PF14223
Retrotran_gag_2 68-210 aa
PF22936
Pol_BBD 608-682 aa
PF13976
gag_pre-integrs 719-775 aa
PF00665
rve 793-890 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803576.1 |
Pfam | PF14223 |
Retrotran_gag_2 | Domain | 68 | 210 | 7.8e-22 | 78.5 | gag-polypeptide of LTR copia-type |
XP_057803576.1 |
Pfam | PF22936 |
Pol_BBD | Domain | 608 | 682 | 8.9e-17 | 61.9 | Pol polyprotein, beta-barrel domain |
XP_057803576.1 |
Pfam | PF13976 |
gag_pre-integrs | Domain | 719 | 775 | 3.9e-13 | 49.7 | GAG-pre-integrase domain |
XP_057803576.1 |
Pfam | PF00665 |
rve | Domain | 793 | 890 | 1.4e-14 | 54.9 | Integrase core domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。