Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003030`

染色体: Chr03 坐标: 47218802-47222273 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003030`
名称	SmilChr03G003030
描述	vacuolar protein sorting-associated protein 24 homolog 1-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	47218802 - 47222273 / `+`

ID 对照

NCBI Gene ID	`LOC131016174`
GeneID	`131016174`
locus_tag	`-`
NCBI Name	`LOC131016174`
原始查询	`SmilChr03G003030`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	vacuolar protein sorting-associated protein 24 homolog 1-like
产物	vacuolar protein sorting-associated protein 24 homolog 1-like
Arabidopsis	`AT5G22950` (VPS24.1) SNF7 family protein [Source:NCBI gene (formerly Entrezgene);Acc:832359] identity=81.2; qcov=1.03; evalue=6.34e-123; confidence=high
Rice	`Os03g0108400` - identity=73.6; qcov=1.04; evalue=3.41e-109; confidence=high
GO	GO:0000815 (ESCRT III complex); GO:0005771 (multivesicular body); GO:0015031 (protein transport); GO:0032509 (endosome transport via multivesicular body sorting pathway); GO:0045324 (late endosome to vacuole transport)
KEGG	smil04144 (Endocytosis - Salvia miltiorrhiza (redroot sage))
Pfam	PF03357 (Snf7)
InterPro	-
eggNOG	-
NR	GeneID:131016174

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057800783.1`
2	Cytosol	细胞质基质	1.00000	`XP_057800783.1`
3	Vesicle	囊泡	0.80000	`XP_057800784.1`
4	Midbody	Midbody	0.40000	`XP_057800783.1`
5	Cytoplasmic vesicle	细胞质囊泡	0.40000	`XP_057800784.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:47219310`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B103,B46,C76
`Chr3:47221771`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A21,B29,B66,B91,D7
`Chr3:47221802`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr3:47222044`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B33

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800783.1

251 aa

126

251

Snf7

PF03357 Snf7 21-187 aa

XP_057800784.1

222 aa

111

222

Snf7

PF03357 Snf7 21-187 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800783.1`	Pfam	`PF03357`	Snf7	Family	21	187	3.8e-32	112.0	Snf7
`XP_057800784.1`	Pfam	`PF03357`	Snf7	Family	21	187	2.5e-32	112.6	Snf7

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057944801.1
GAGTCATGTATAATGGAACGAGTAATAATTTTGTTGTTCTATTTGTGGCAACAGTGAGTCAGTTATTCTTAGCTTCATGTAATTTTATTTTTTGTGTCATTAGATCTTTATATAATTTTTTATGTTAATACGAACATTTGAATTACTAAATCAACCTTTTACAAATTAAACTATTGATGTGAAAATAAATTATGTTTTCGATCATCGAGTCATGAGCAGCATATTCTTTTCCTTTTTACCTCCATTTCTGAGCTTCTCTG...

XM_057944800.1
GAAAATAAATTATGTTTTCGATCATCGAGTCATGAGCAGCATATTCTTTTCCTTTTTACCTCCATTTCTGAGCTTCTCTGTTGTTCATGCTTTTTCTCATCAAACGCAGAGTGAAAGGGAAGTAAACACAAAGCAAAACCGCTGCGTAATCGCAAACGCGGTGAAATCAGAATCCGATATTCCAGAAGAATTTATCTCCAATAAAGAACAAGAAAAAGAGGGCAAAGAAGGCAAAAAATAGAAGGAAAAAAATGGAAAAA...

CDS

2 records

下载 CDS FASTA

LOC131016174
ATGGAAAAAGTGATGAATATATTGAAGCCGAAGCCCAATCCGCAGCAATTGCTCAGAGATTGGCAGCGTCGCCTCCGCCAAGAGTGCCGCAATATGGAACGCCAAATCCGAGACATACAGAGGGAAGAGAAGAATGTGCAGAAAGCGATCAAAGAGGCAGCTAAACGGAATGACATGGGTTCAGCTAAGGAGCTTGCAAAAGAACTTGTGAGATCTAGGAAAACCGTGAACCGTCTTTATGAAAACAAAGCTCAGTTGAA...

Protein

2 records

下载 Protein FASTA

XP_057800783.1
MEKVMNILKPKPNPQQLLRDWQRRLRQECRNMERQIRDIQREEKNVQKAIKEAAKRNDMGSAKELAKELVRSRKTVNRLYENKAQLNSISMHLGESVAVARTVGHLSKSAEVMKLVNNLMKAPQMAVTMQEFSKEMTKAGVIEEMVNEAVDYALDSEDIEEETEEEIEKVLTAIAGETAAQLPEAVRKQKLKQPATSEEVEVSFQSFYFLHLPLSRIHIVVYFPNDMKLQEKIDDEEEMEEIRARLARVRS

XP_057800784.1
MEKVMNILKPKPNPQQLLRDWQRRLRQECRNMERQIRDIQREEKNVQKAIKEAAKRNDMGSAKELAKELVRSRKTVNRLYENKAQLNSISMHLGESVAVARTVGHLSKSAEVMKLVNNLMKAPQMAVTMQEFSKEMTKAGVIEEMVNEAVDYALDSEDIEEETEEEIEKVLTAIAGETAAQLPEAVRKQKLKQPATSEEVEEKIDDEEEMEEIRARLARVRS

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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