Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003031`

染色体: Chr03 坐标: 47225785-47228912 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003031`
名称	SmilChr03G003031
描述	E3 ubiquitin-protein ligase SP1
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	47225785 - 47228912 / `-`

ID 对照

NCBI Gene ID	`LOC131016175`
GeneID	`131016175`
locus_tag	`-`
NCBI Name	`LOC131016175`
原始查询	`SmilChr03G003031`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	E3 ubiquitin-protein ligase SP1
产物	E3 ubiquitin-protein ligase SP1
Arabidopsis	`AT1G63900` (DAL1) E3 Ubiquitin ligase family protein [Source:NCBI gene (formerly Entrezgene);Acc:842693] identity=73.9; qcov=1; evalue=1.04e-131; confidence=high
Rice	`Os07g0647800` - identity=69; qcov=0.763; evalue=8.72e-88; confidence=high
GO	GO:0004842 (ubiquitin-protein transferase activity); GO:0006996 (organelle organization); GO:0016567 (protein ubiquitination)
KEGG	-
Pfam	PF12483 (GIDE); PF13920 (zf-C3HC4_3); PF14447 (Prok-RING_4)
InterPro	-
eggNOG	-
NR	GeneID:131016175

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057800785.1`
2	Endoplasmic reticulum	内质网	0.80000	`XP_057800787.1`
3	Endoplasmic reticulum membrane	内质网膜	0.60000	`XP_057800787.1`
4	Chloroplast membrane	叶绿体膜	0.40000	`XP_057800785.1`
5	Peroxisome	过氧化物酶体	0.40000	`XP_057800785.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:47226176`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B134,B33,B76
`Chr3:47226215`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C68

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800785.1

345 aa

172

345

GIDE

zf-C3HC4_3

Prok-RING_4

PF12483 GIDE 86-235 aa PF13920 zf-C3HC4_3 296-339 aa PF14447 Prok-RING_4 298-338 aa

XP_057800786.1

344 aa

172

344

GIDE

zf-C3HC4_3

Prok-RING_4

PF12483 GIDE 86-235 aa PF13920 zf-C3HC4_3 295-338 aa PF14447 Prok-RING_4 297-337 aa

XP_057800787.1

241 aa

120

241

GIDE

zf-C3HC4_3

Prok-RING_4

PF12483 GIDE 3-132 aa PF13920 zf-C3HC4_3 192-235 aa PF14447 Prok-RING_4 194-234 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800785.1`	Pfam	`PF12483`	GIDE	Family	86	235	1.5e-39	135.8	E3 Ubiquitin ligase
`XP_057800785.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	296	339	4.3e-14	52.8	Zinc finger, C3HC4 type (RING finger)
`XP_057800785.1`	Pfam	`PF14447`	Prok-RING_4	Family	298	338	1.9e-06	28.4	Prokaryotic RING finger family 4
`XP_057800786.1`	Pfam	`PF12483`	GIDE	Family	86	235	1.5e-39	135.8	E3 Ubiquitin ligase
`XP_057800786.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	295	338	4.3e-14	52.8	Zinc finger, C3HC4 type (RING finger)
`XP_057800786.1`	Pfam	`PF14447`	Prok-RING_4	Family	297	337	1.9e-06	28.4	Prokaryotic RING finger family 4
`XP_057800787.1`	Pfam	`PF12483`	GIDE	Family	3	132	5.2e-36	124.2	E3 Ubiquitin ligase
`XP_057800787.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	192	235	2.8e-14	53.4	Zinc finger, C3HC4 type (RING finger)
`XP_057800787.1`	Pfam	`PF14447`	Prok-RING_4	Family	194	234	1.2e-06	29.0	Prokaryotic RING finger family 4

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057944803.1
TCGCAGAAAATTTATAGCGCTTTTCCGCGAAAAATGCTTGCTTCGCTCTCCAATTTACTCTTGGGATCCGATTCTGTGTTCTCTGTAGCACCACATCTCTTATGCAACCACTCTTCGTCTTCTTCAATCAAACTATTGTGCCCTAACTTTTATTCCATTAATTCAATTCTACTTTCTAATCGAAAAATTTCTCCTTTTTTATTTCCTTCCCCCTTTCTACTTTTTATACTGTAATCCTCAATCCCCAAATTTTCTGTTTA...

XM_057944802.1
AAATGCTTGCTTCGCTCTCCAATTTACTCTTGGGATCCGATTCTGTGTTCTCTGTAGCACCACATCTCTTATGCAACCACTCTTCGTCTTCTTCAATCAAACTATTGTGCCCTAACTTTTATTCCATTAATTCAATTCTACTTTCTAATCGAAAAATTTCTCCTTTTTTATTTCCTTCCCCCTTTCTACTTTTTATACTGTAATCCTCAATCCCCAAATTTTCTGTTTAATTGGACGCCTATAGATGTTTGGGAAATTGA...

CDS

3 records

下载 CDS FASTA

LOC131016175
ATGATACCTGTTGGGGGAATTACGTGTTGCCTGAGCGCTGCTGCGCTTTATCTTCTGGGGAGGAGCAGTGGAAGAGATGCTGATGTTCTGAAGTCTGTTACTCGAGTGAATCAGTTGAAGGACTTGGCTCAATTATTGGATGCTGCAAGCAAAGTGCTGCCACTGGTTGTCTCTGTGTCAGGGAGGGTTGGTTCGGAGACACCGATTAATTGCGAGTACAGTGGTTTACGGGGTGTAATTGTGGAACAGACGGCGGAGCA...

Protein

3 records

下载 Protein FASTA

XP_057800785.1
MIPVGGITCCLSAAALYLLGRSSGRDADVLKSVTRVNQLKDLAQLLDAASKVLPLVVSVSGRVGSETPINCEYSGLRGVIVEQTAEQHFLKHNDAGSWIQDSALMLSMCKEVPWYLDDGTSRVHVVGGRGATGLVLTVGSEVFEESGRSLVRGTLDYLQGLKMLGVKRIERVLPTGTPLTVVGEAVKDDIGSIRIQQPHKGPFYVSDKTIDQLIANLGKWSRLYKFASLGLSLFGVYLVAKHAFQFIMERRRHWEMRKRV...

XP_057800786.1
MIPVGGITCCLSAAALYLLGRSSGRDADVLKSVTRVNQLKDLAQLLDAASKVLPLVVSVSGRVGSETPINCEYSGLRGVIVEQTAEQHFLKHNDAGSWIQDSALMLSMCKEVPWYLDDGTSRVHVVGGRGATGLVLTVGSEVFEESGRSLVRGTLDYLQGLKMLGVKRIERVLPTGTPLTVVGEAVKDDIGSIRIQQPHKGPFYVSDKTIDQLIANLGKWSRLYKFASLGLSLFGVYLVAKHAFQFIMERRRHWEMRKRV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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