Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003038`

染色体: Chr03 坐标: 47275449-47278313 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003038`
名称	SmilChr03G003038
描述	uncharacterized SmilChr03G003038
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	47275449 - 47278313 / `+`

ID 对照

NCBI Gene ID	`LOC131016183`
GeneID	`131016183`
locus_tag	`-`
NCBI Name	`LOC131016183`
原始查询	`SmilChr03G003038`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Exonuclease family protein [Source:NCBI gene (formerly Entrezgene);Acc:822421]; symbol=AT3G27970; hit=AT3G27970; species=arabidopsis; confidence=high
产物	Exonuclease family protein [Source:NCBI gene (formerly Entrezgene);Acc:822421]; symbol=AT3G27970; hit=AT3G27970; species=arabidopsis; confidence=high
Arabidopsis	`AT3G27970` (AT3G27970) Exonuclease family protein [Source:NCBI gene (formerly Entrezgene);Acc:822421] identity=45.8; qcov=0.997; evalue=4.1e-110; confidence=high
Rice	`Os02g0709000` - identity=44.9; qcov=1.01; evalue=1e-104; confidence=medium
GO	GO:0003676 (nucleic acid binding); GO:0005634 (nucleus); GO:0006364 (rRNA processing); GO:0008408 (3'-5' exonuclease activity)
KEGG	-
Pfam	PF00929 (RNase_T)
InterPro	-
eggNOG	-
NR	GeneID:131016183

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057800794.1`
2	Cytoplasm	细胞质	1.00000	`XP_057800794.1`
3	Cytosol	细胞质基质	0.40000	`XP_057800794.1`
4	Chromosome	染色体	0.00000	`XP_057800794.1`
5	Centromere	着丝粒	0.00000	`XP_057800794.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:47276257`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B42,B43
`Chr3:47276513`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B125,B79,C42,C73,D6
`Chr3:47276598`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B22,B23
`Chr3:47276615`	`AC`	`A`	1bp_deletion	frameshift_variant	1	D11
`Chr3:47276615`	`AC`	`A`	1bp_deletion	CDS_variant	1	D11
`Chr3:47276839`	`CT`	`C`	1bp_deletion	frameshift_variant	2	B63,B83
`Chr3:47276839`	`CT`	`C`	1bp_deletion	CDS_variant	2	B63,B83
`Chr3:47276866`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B125,B79,C42,C73,D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800794.1

384 aa

192

384

RNase_T

PF00929 RNase_T 183-318 aa

XP_057800795.1

357 aa

178

357

RNase_T

PF00929 RNase_T 183-243 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800794.1`	Pfam	`PF00929`	RNase_T	Domain	183	318	3e-07	31.8	Exonuclease
`XP_057800795.1`	Pfam	`PF00929`	RNase_T	Domain	183	243	1.4e-05	26.4	Exonuclease

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057944812.1
ATGTCGTTAAATAAATAGAAATGAAAAAATAAACTGCTAAGCAATATTGAGATTTATAAAAAAATGCATTGCTATTCGAGCGAGTAAAAGAATGGAAGCCCAAATCGGGCAAAAAGATTGGCATTGCTCCCACGTGTTCAAAATTTCCATTTTTCTTCCTCATTCCATTTCCATGGATTCTATCGACAATCTTTCCAAAACCCTAGAGACTTCGTCGAAGAGGCATAGATGTGCAGCATGTTTCAAGCAATACAAGAAAA...

XM_057944811.1
TAAATAAATAGAAATGAAAAAATAAACTGCTAAGCAATATTGAGATTTATAAAAAAATGCATTGCTATTCGAGCGAGTAAAAGAATGGAAGCCCAAATCGGGCAAAAAGATTGGCATTGCTCCCACGTGTTCAAAATTTCCATTTTTCTTCCTCATTCCATTTCCATGGATTCTATCGACAATCTTTCCAAAACCCTAGAGACTTCGTCGAAGAGGCATAGATGTGCAGCATGTTTCAAGCAATACAAGAAAAAGGAACA...

CDS

2 records

下载 CDS FASTA

LOC131016183
ATGGAAGCCCAAATCGGGCAAAAAGATTGGCATTGCTCCCACGTGTTCAAAATTTCCATTTTTCTTCCTCATTCCATTTCCATGGATTCTATCGACAATCTTTCCAAAACCCTAGAGACTTCGTCGAAGAGGCATAGATGTGCAGCATGTTTCAAGCAATACAAGAAAAAGGAACATCTTATCGAACATATGAAGATCTCATATCACTCTACTCACCAACCTAAATGTGACATATGCCAAAAGCATTGCAAATCGTTTGA...

Protein

2 records

下载 Protein FASTA

XP_057800794.1
MEAQIGQKDWHCSHVFKISIFLPHSISMDSIDNLSKTLETSSKRHRCAACFKQYKKKEHLIEHMKISYHSTHQPKCDICQKHCKSFESLKEHTTGPLSKRKCSEVFSKRGCSLCMRIFESSVFLSEHQQVCRLPAPTPLGLCTESQIYDPPLVIEHERGSRPEAVAIDCAMVGGGSDGSLDLCVRVCLVDEDEKLIFHTYVLPQIPITNYRYEVTGITEDHLKDAMPLKEVQDKILYILNNGESIGILRLNGGKARVLVG...

XP_057800795.1
MEAQIGQKDWHCSHVFKISIFLPHSISMDSIDNLSKTLETSSKRHRCAACFKQYKKKEHLIEHMKISYHSTHQPKCDICQKHCKSFESLKEHTTGPLSKRKCSEVFSKRGCSLCMRIFESSVFLSEHQQVCRLPAPTPLGLCTESQIYDPPLVIEHERGSRPEAVAIDCAMVGGGSDGSLDLCVRVCLVDEDEKLIFHTYVLPQIPITNYRYEVTGITEDHLKDAMPLKEVQDKILYILNNGESIGILRLNGGKARVLVG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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