Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003039`

染色体: Chr03 坐标: 47285032-47289471 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003039`
名称	SmilChr03G003039
描述	uncharacterized protein At4g37920-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	47285032 - 47289471 / `+`

ID 对照

NCBI Gene ID	`LOC131016184`
GeneID	`131016184`
locus_tag	`-`
NCBI Name	`LOC131016184`
原始查询	`SmilChr03G003039`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	endoribonuclease E-like protein [Source:NCBI gene (formerly Entrezgene);Acc:829948]; symbol=AT4G37920; hit=AT4G37920; species=arabidopsis; confidence=high
产物	endoribonuclease E-like protein [Source:NCBI gene (formerly Entrezgene);Acc:829948]; symbol=AT4G37920; hit=AT4G37920; species=arabidopsis; confidence=high
Arabidopsis	`AT4G37920` (AT4G37920) endoribonuclease E-like protein [Source:NCBI gene (formerly Entrezgene);Acc:829948] identity=75.9; qcov=0.818; evalue=0; confidence=high
Rice	`Os01g0306800` (P0552C05.41-2) - identity=62.3; qcov=0.823; evalue=2.13e-151; confidence=high
GO	GO:0009535 (chloroplast thylakoid membrane); GO:0009941 (chloroplast envelope)
KEGG	-
Pfam	PF26740 (DUF8246); PF30870 (At4g37920_C); PF30872 (At4g37920_M)
InterPro	-
eggNOG	-
NR	GeneID:131016184

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057800796.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057800796.1`
3	Nucleus	细胞核	0.00000	`XP_057800796.1`
4	Chromosome	染色体	0.00000	`XP_057800796.1`
5	Centromere	着丝粒	0.00000	`XP_057800796.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:47285957`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A20,B104,B111,B21,B36
`Chr3:47285980`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B125,C42,C73,D6
`Chr3:47285984`	`A`	`ACT`	2bp_insertion	frameshift_variant	65	A1,A13,A16,A2,A8,B1,B101,B102,B107,B108,B114,B117,B132,B15,B16,B19,B21,B24,B26,B27,B3,B30,B37,B38,B42,B47,B49,B56,B57,B64,B74,B77,B8,B80,B82,B89,B9,B91,B93,B99,C14,C15,C16,C19,C20,C26,C28,C30,C32,C37,C41,C45,C46,C54,C56,C58,C6,C64,C66,C68,C74,C75,C78,C8,C83
`Chr3:47286183`	`G`	`A`	EMS_canonical_SNV	stop_gained	35	A16,A8,B101,B117,B14,B15,B16,B21,B39,B56,B64,B74,B8,B80,B82,B89,B9,B99,C15,C18,C24,C26,C28,C30,C35,C44,C56,C58,C61,C64,C66,C74,C8,C83,C85
`Chr3:47286205`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B127,B32,C52
`Chr3:47286229`	`G`	`GA`	1bp_insertion	frameshift_variant	1	C77
`Chr3:47286229`	`G`	`GA`	1bp_insertion	CDS_variant	1	C77
`Chr3:47286285`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B140,D7
`Chr3:47286299`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B75,C33,C55
`Chr3:47286351`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B49,B79,C45,C73,D6
`Chr3:47286352`	`C`	`T`	EMS_canonical_SNV	stop_gained	16	B12,B123,B128,B135,B46,B52,B55,B78,B98,C13,C41,C51,C77,C78,D2,D4
`Chr3:47286380`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B140,C42,D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800796.1

406 aa

203

406

DUF8246

At4g37920_M

At4g37920_C

PF26740 DUF8246 70-213 aa PF30872 At4g37920_M 229-295 aa PF30870 At4g37920_C 299-392 aa

XP_057800797.1

406 aa

203

406

DUF8246

At4g37920_M

At4g37920_C

PF26740 DUF8246 70-213 aa PF30872 At4g37920_M 229-295 aa PF30870 At4g37920_C 299-392 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800796.1`	Pfam	`PF26740`	DUF8246	Domain	70	213	3.6e-63	212.5	Domain of unknown function (DUF8246)
`XP_057800796.1`	Pfam	`PF30872`	At4g37920_M	Domain	229	295	2e-36	124.4	At4g37920-like middle domain
`XP_057800796.1`	Pfam	`PF30870`	At4g37920_C	Domain	299	392	6.9e-44	148.9	At4g37920-like C-terminal domain
`XP_057800797.1`	Pfam	`PF26740`	DUF8246	Domain	70	213	3.6e-63	212.5	Domain of unknown function (DUF8246)
`XP_057800797.1`	Pfam	`PF30872`	At4g37920_M	Domain	229	295	2e-36	124.4	At4g37920-like middle domain
`XP_057800797.1`	Pfam	`PF30870`	At4g37920_C	Domain	299	392	6.9e-44	148.9	At4g37920-like C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057944813.1
TATATTTTGAATTATTGAATATGTTAAAAAGTAAAACCTAAACCCTAATTCCCTAAACTAAATCAGCGCCGCACAGCCACGGCTCCACCACCGCGCCTTGTCTGACTCCCATCGCTCTCCAGTCTCCACCACCGCGCCGCCGCGCGGTCCGCGCCGTCCCACCCCGCCGGCCGCCACCCCACCTACTCTGCGCCTTCAATCCCCCACCACGCCACCTCCGCGCTTGCAATCCCCCAGAGCAGCTCGAAGCTCGAGCGCAG...

XM_057944814.1
AAAAAGTAAAACCTAAACCCTAATTCCCTAAACTAAATCAGCGCCGCACAGCCACGGCTCCACCACCGCGCCTTGTCTGACTCCCATCGCTCTCCAGTCTCCACCACCGCGCCGCCGCGCGGTCCGCGCCGTCCCACCCCGCCGGCCGCCACCCCACCTACTCTGCGCCTTCAATCCCCCACCACGCCACCTCCGCGCTTGCAATCCCCCAGAGCAGCTCGAAGCTCGAGCGCAGAGCGCCGCAGATCTGCGCCTCTCTT...

CDS

2 records

下载 CDS FASTA

LOC131016184
ATGGCCTGTAAACTCTCGCTCTTCAGCTCCACTCTCTCTCTAATCCATCCAGAAATATCTCCACATTCTGCAAAATTACCACTTCAGTTACCAATTTCTCAAAATTTTCAAAGCTTTACAGCTGCAAAATCGAGAAGAACCGAAGATGCGTGGCAGTTTTGCGCTACTGCATCTGGAACGGAGGTTGAGGTTGAAGTTGCAGAGGGGTACACGATAACCCAATTTATTGATAAGATCATCGACGTTTTCCTGAACGAGAA...

Protein

2 records

下载 Protein FASTA

XP_057800796.1
MACKLSLFSSTLSLIHPEISPHSAKLPLQLPISQNFQSFTAAKSRRTEDAWQFCATASGTEVEVEVAEGYTITQFIDKIIDVFLNEKPKSRDWKKYLIFREEWGKYRQKFYNRCKTRADSEKDSHIKQKLVDLSRRVRKIDEEMEKHTALLKEIQDSPMDINAIVAKRRGDFTDSFFRHLTLVSETYDSLEDRDAVARLGTRCLSAVSAFDNTLEIVGTLDIAQAKFDDILNSPSIDAACEKIKSLAKAKELDSSLILLI...

XP_057800797.1
MACKLSLFSSTLSLIHPEISPHSAKLPLQLPISQNFQSFTAAKSRRTEDAWQFCATASGTEVEVEVAEGYTITQFIDKIIDVFLNEKPKSRDWKKYLIFREEWGKYRQKFYNRCKTRADSEKDSHIKQKLVDLSRRVRKIDEEMEKHTALLKEIQDSPMDINAIVAKRRGDFTDSFFRHLTLVSETYDSLEDRDAVARLGTRCLSAVSAFDNTLEIVGTLDIAQAKFDDILNSPSIDAACEKIKSLAKAKELDSSLILLI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器