Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003043`

染色体: Chr03 坐标: 47324922-47330380 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003043`
名称	SmilChr03G003043
描述	CSC1-like protein At4g02900
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	47324922 - 47330380 / `-`

ID 对照

NCBI Gene ID	`LOC131016187`
GeneID	`131016187`
locus_tag	`-`
NCBI Name	`LOC131016187`
原始查询	`SmilChr03G003043`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	CSC1-like protein At4g02900
产物	CSC1-like protein At4g02900
Arabidopsis	`AT4G02900` (AT4G02900) ERD (early-responsive to dehydration stress) family protein [Source:NCBI gene (formerly Entrezgene);Acc:828143] identity=69.7; qcov=1; evalue=0; confidence=high
Rice	`Os05g0393800` (OsSTA149) - identity=67.5; qcov=0.999; evalue=0; confidence=high
GO	GO:0005227 (calcium-activated cation channel activity); GO:0005886 (plasma membrane)
KEGG	-
Pfam	PF02714 (RSN1_7TM); PF13967 (RSN1_TM); PF14703 (PHM7_cyt)
InterPro	-
eggNOG	-
NR	GeneID:131016187

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057800799.1`
2	Nucleus	细胞核	0.00000	`XP_057800799.1`
3	Chromosome	染色体	0.00000	`XP_057800799.1`
4	Centromere	着丝粒	0.00000	`XP_057800799.1`
5	Chromatin	染色质	0.00000	`XP_057800799.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:47325241`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B103,B46,C76
`Chr3:47325725`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	D10,D11
`Chr3:47326547`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B129
`Chr3:47326837`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B113,B124,B50,B70,C7
`Chr3:47327220`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B140,D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800799.1

767 aa

384

767

RSN1_TM

PHM7_cyt

RSN1_7TM

PF13967 RSN1_TM 7-177 aa PF14703 PHM7_cyt 198-360 aa PF02714 RSN1_7TM 371-643 aa

XP_057800800.1

767 aa

384

767

RSN1_TM

PHM7_cyt

RSN1_7TM

PF13967 RSN1_TM 7-177 aa PF14703 PHM7_cyt 198-360 aa PF02714 RSN1_7TM 371-643 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800799.1`	Pfam	`PF13967`	RSN1_TM	Family	7	177	3.8e-42	144.3	Late exocytosis, associated with Golgi transport
`XP_057800799.1`	Pfam	`PF14703`	PHM7_cyt	Domain	198	360	9.5e-46	156.9	Cytosolic domain of 10TM putative phosphate transporter
`XP_057800799.1`	Pfam	`PF02714`	RSN1_7TM	Family	371	643	1.5e-83	281.1	Calcium-dependent channel, 7TM region, putative phosphate
`XP_057800800.1`	Pfam	`PF13967`	RSN1_TM	Family	7	177	3.8e-42	144.3	Late exocytosis, associated with Golgi transport
`XP_057800800.1`	Pfam	`PF14703`	PHM7_cyt	Domain	198	360	9.5e-46	156.9	Cytosolic domain of 10TM putative phosphate transporter
`XP_057800800.1`	Pfam	`PF02714`	RSN1_7TM	Family	371	643	1.5e-83	281.1	Calcium-dependent channel, 7TM region, putative phosphate

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057944817.1
AAACAAACAAACTGTGTTGAGAAAACGAGAAAGTCGGGAAGCAAAAAGAGCCGCGTTGTACGCCTCGACCTCCTTGCCGCCCTCGCTACCTCCGCCTCCGCCTCCGCCTCAAACCCCTAATTCCTTCTCGCTTCGACTCGGAGGAGACTAGGGATACCATTCCTCTCCATCAATATAGAGGTCATAGGTGATCCTCAGATAAGAGCATGGCTAGCGTTCAAGATATTGTCGTAGCAGCTGCCATCAATCTTTTATCTGTA...

XM_057944816.1
AAACAAACAAACTGTGTTGAGAAAACGAGAAAGTCGGGAAGCAAAAAGAGCCGCGTTGTACGCCTCGACCTCCTTGCCGCCCTCGCTACCTCCGCCTCCGCCTCCGCCTCAAACCCCTAATTCCTTCTCGCTTCGACTCGGAGGAGACTAGGGATACCATTCCTCTCCATCAATATAGGTTATCTATGTTAAGTTTTAATGAGCAGGATGAACTGTGATATTTCGACGTGTTTTTGGAGCTCACAGAGATCAGTCTAGCT...

CDS

2 records

下载 CDS FASTA

LOC131016187
ATGGCTAGCGTTCAAGATATTGTCGTAGCAGCTGCCATCAATCTTTTATCTGTATTGGCATTTCTTCTAGCTTTTGCATTCTTAAGGCTCCAACCTTTTTTTGATAGAGTGTACTTCCCAAAATGGTACAAGAAGGGCATACGAGAAAGCCCCAAGAGTTCGGGGCCTGTGATGAAGAAATTCTTGAACTTAGATTTCAGAACATATTTAAGGTTTTGGAAATGGATGCCTGAGGCATTAAGAATGCCGGAGCCTGAGCT...

Protein

2 records

下载 Protein FASTA

XP_057800799.1
MASVQDIVVAAAINLLSVLAFLLAFAFLRLQPFFDRVYFPKWYKKGIRESPKSSGPVMKKFLNLDFRTYLRFWKWMPEALRMPEPELIEHAGLDAAVYVRIYLLGLKIFVPIAFLAFSVLVPINWTGESLDKIKDITYSNIDKLSISNIPPGSLRFIAHIAMAYIFTFWTCYSLYKEYKIVMTKRLEFLAAENRRPDQFTVLVRNVPPDPDESVSEHVEHFFCVNHADTYLMHQVVYNANKLANLVETKKSLHNWQTYYQ...

XP_057800800.1
MASVQDIVVAAAINLLSVLAFLLAFAFLRLQPFFDRVYFPKWYKKGIRESPKSSGPVMKKFLNLDFRTYLRFWKWMPEALRMPEPELIEHAGLDAAVYVRIYLLGLKIFVPIAFLAFSVLVPINWTGESLDKIKDITYSNIDKLSISNIPPGSLRFIAHIAMAYIFTFWTCYSLYKEYKIVMTKRLEFLAAENRRPDQFTVLVRNVPPDPDESVSEHVEHFFCVNHADTYLMHQVVYNANKLANLVETKKSLHNWQTYYQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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