当前解析结果
SmilChr03G003071| 统一新 Gene ID | SmilChr03G003071 |
|---|---|
| 名称 | SmilChr03G003071 |
| 描述 | uncharacterized SmilChr03G003071 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 47707899 - 47715361 / - |
| NCBI Gene ID | LOC131018910 |
|---|---|
| GeneID | 131018910 |
| locus_tag | - |
| NCBI Name | LOC131018910 |
| 原始查询 | SmilChr03G003071 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0484800; species=rice; confidence=low |
| 产物 | hit=Os06g0484800; species=rice; confidence=low |
| Arabidopsis | AT1G43760 (AT1G43760)DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840968] identity=27.2; qcov=0.298; evalue=3.61e-42; confidence=weak |
| Rice | Os06g0484800- identity=28.8; qcov=0.599; evalue=2.27e-102; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF13456 (RVT_3); PF13966 (zf-RVT); PF14529 (Exo_endo_phos_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018910 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057803582.1 |
| 2 | Nucleus | 细胞核 | 0.80000 | XP_057803582.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057803582.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057803582.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057803582.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:47707907 |
CCA |
C |
2bp_deletion | frameshift_variant | 1 | B104 |
Chr3:47707907 |
CCA |
C |
2bp_deletion | CDS_variant | 1 | B104 |
Chr3:47707908 |
C |
CA |
1bp_insertion | frameshift_variant | 96 | A10,A13,A14,A2,A20,A21,A22,A24,B100,B102,B11,B113,B114,B115,B121,B122,B124,B125,B127,B129,B13,B130,B131,B132,B134,B137,B21,B23,B24,B28,B31,B34,B40,B41,B44,B46,B47,B48,B49,B5,B50,B51,B52,B53,B54,B55,B61,B63,B67,B69,B70,B73,B78,B79,B83,B86,B97,C1,C12,C14,C15,C18,C19,C2,C23,C26,C27,C29,C3,C32,C33,C36,C39,C40,C46,C50,C51,C54,C58,C59,C60,C61,C65,C68,C72,C73,C78,C79,C82,C83,D2,D3,D4,D5,D6,D9 |
Chr3:47707941 |
CT |
C |
1bp_deletion | frameshift_variant | 1 | B104 |
Chr3:47707941 |
CT |
C |
1bp_deletion | CDS_variant | 1 | B104 |
Chr3:47707956 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr3:47708001 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
Chr3:47708015 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | B94 |
Chr3:47708015 |
GA |
G |
1bp_deletion | CDS_variant | 1 | B94 |
Chr3:47708042 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr3:47708054 |
G |
A |
EMS_canonical_SNV | stop_gained | 30 | A16,A4,A7,A8,B106,B124,B136,B17,B26,B29,B30,B37,B45,B46,B60,B65,B70,B72,B73,B80,B81,B9,B91,C24,C27,C28,C40,C52,C7,D7 |
Chr3:47708081 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B96,C85 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803582.1PF14529
Exo_endo_phos_2 114-213 aa
PF00078
RVT_1 492-751 aa
PF13966
zf-RVT 1005-1087 aa
PF13456
RVT_3 1215-1292 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803582.1 |
Pfam | PF14529 |
Exo_endo_phos_2 | Domain | 114 | 213 | 3.8e-07 | 30.7 | Endonuclease-reverse transcriptase |
XP_057803582.1 |
Pfam | PF00078 |
RVT_1 | Domain | 492 | 751 | 2.7e-30 | 106.5 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057803582.1 |
Pfam | PF13966 |
zf-RVT | Domain | 1005 | 1087 | 1.3e-17 | 64.9 | zinc-binding in reverse transcriptase |
XP_057803582.1 |
Pfam | PF13456 |
RVT_3 | Domain | 1215 | 1292 | 1.1e-09 | 38.9 | Reverse transcriptase-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。