Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003073`

染色体: Chr03 坐标: 47754546-47768803 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003073`
名称	SmilChr03G003073
描述	transcription factor BHLH42
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	47754546 - 47768803 / `+`

ID 对照

NCBI Gene ID	`LOC131016218`
GeneID	`131016218`
locus_tag	`-`
NCBI Name	`LOC131016218`
原始查询	`SmilChr03G003073`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcription factor BHLH42
产物	transcription factor BHLH42
Arabidopsis	`AT1G63650` (EGL3) basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842669] identity=29.1; qcov=1.07; evalue=1.78e-51; confidence=low
Rice	`Os04g0557200` (OsbHLH015) - identity=27.7; qcov=1.04; evalue=2.42e-44; confidence=low
GO	GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF00010 (HLH); PF14215 (bHLH-MYC_N); PF22754 (bHLH-TF_ACT-like_plant); PF23177 (bHLH_IRO3)
InterPro	-
eggNOG	-
NR	GeneID:131016218

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057800840.1`
2	Cytosol	细胞质基质	0.20000	`XP_057800840.1`
3	Chromosome	染色体	0.00000	`XP_057800841.1`
4	Centromere	着丝粒	0.00000	`XP_057800841.1`
5	Chromatin	染色质	0.00000	`XP_057800841.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:47754840`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C15,C20,C79
`Chr3:47755101`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr3:47755172`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:47765392`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B22,B23,C44
`Chr3:47765703`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C15,C20,C79
`Chr3:47765849`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A18,C1,C42
`Chr3:47766191`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:47768250`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B102,C53

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800840.1

554 aa

277

554

bHLH-MYC_N

HLH

bHLH_IRO3

bHLH-TF_ACT-like_plant

PF14215 bHLH-MYC_N 9-188 aa PF00010 HLH 401-447 aa PF23177 bHLH_IRO3 405-457 aa PF22754 bHLH-TF_ACT-like_plant 470-549 aa

XP_057800841.1

449 aa

224

449

bHLH-MYC_N

HLH

bHLH_IRO3

bHLH-TF_ACT-like_plant

PF14215 bHLH-MYC_N 1-83 aa PF00010 HLH 296-342 aa PF23177 bHLH_IRO3 300-352 aa PF22754 bHLH-TF_ACT-like_plant 365-444 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800840.1`	Pfam	`PF14215`	bHLH-MYC_N	Family	9	188	1.1e-53	182.9	bHLH-MYC and R2R3-MYB transcription factors N-terminal
`XP_057800840.1`	Pfam	`PF00010`	HLH	Domain	401	447	7.9e-14	51.9	Helix-loop-helix DNA-binding domain
`XP_057800840.1`	Pfam	`PF23177`	bHLH_IRO3	Domain	405	457	1.6e-08	35.5	Iron-related transcription factor 3 bHLH domain
`XP_057800840.1`	Pfam	`PF22754`	bHLH-TF_ACT-like_plant	Domain	470	549	2.5e-14	53.9	Plant bHLH transcription factor, ACT-like domain
`XP_057800841.1`	Pfam	`PF14215`	bHLH-MYC_N	Family	1	83	1.8e-25	91.0	bHLH-MYC and R2R3-MYB transcription factors N-terminal
`XP_057800841.1`	Pfam	`PF00010`	HLH	Domain	296	342	7.1e-14	52.1	Helix-loop-helix DNA-binding domain
`XP_057800841.1`	Pfam	`PF23177`	bHLH_IRO3	Domain	300	352	1.2e-08	35.9	Iron-related transcription factor 3 bHLH domain
`XP_057800841.1`	Pfam	`PF22754`	bHLH-TF_ACT-like_plant	Domain	365	444	1.8e-14	54.3	Plant bHLH transcription factor, ACT-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057944858.1
TCTTCCAAATTCCAACCATTTTTCTTCTCTCTTTTTGCTTTAGAAATTTCATTATCTGAAAATTAATTACTTTCAACTCAACGTAAGCTACGTTTCCCCCCAGCCCCCTCTTTTTCTTTTGCAGAATAATCATTTAATTTTTGTTGGCGTACGTGTCGTTTATAGAGTTGATTGAAAAGGGGTTTTCGCTTTGAATTCTGTTATACTCATCAATCATCATCCTCTACTCCTAAGTAGGGAAATAAATTTCTTTCAATTTA...

XM_057944857.1
CTTCCAAATTCCAACCATTTTTCTTCTCTCTTTTTGCTTTAGAAATTTCATTATCTGAAAATTAATTACTTTCAACTCAACGTAAGCTACGTTTCCCCCCAGCCCCCTCTTTTTCTTTTGCAGAATAATCATTTAATTTTTGTTGGCGTACGTGTCGTTTATAGAGTTGATTGAAAAGGGGTTTTCGCTTTGAATTCTGTTATACTCATCAATCATCATCCTCTACTCCTAAGTAGGGAAATAAATTTCTTTCAATTTAT...

CDS

2 records

下载 CDS FASTA

LOC131016218
ATGGCTGAGCCGCCGGGGAGCCGGCTGCAGAGCTTGCTGCAGGCGGCGGTTCAAAGCGTTGAGTGGACTTATAGCATTTTCTGGCAATTCTGCCCTCAACAAGGAGTTATAGCGTGGAGTGATGGATACTACAACGGAGCAATAAAGACACGGAAGACGGTGCAGGCGACGGAGGAGAGCGCGGAGGAGGCGACGCGGCAGAGAAGCCAGCAGCTGAGGGAGCTGTACGACTGTCTGGCCGGCGGAGACACCAGCCAGAG...

LOC131016218
ATGTGCGTCTCCTTCTCCTTTCCGCCGGGAGTAGGGTTACCTGGGAAGGCATATGTAGATAGGCAGCACATTTGGCTTACAAGAGCAAATAAGGCCGACAGCACACTCTTCTCCAGAACAATTCTTGCTGAGAGTGCTAAAATACAGACAGTGGTATGCATTCCTCTTCTGGATGGGGTTGTGGAACTTGGGACAACACAGAGGGTTGAAGAAGACATTGGATTGATCCAACGTGTGAAGAGCTTCTTCTCCCACTGTCA...

Protein

2 records

下载 Protein FASTA

XP_057800840.1
MAEPPGSRLQSLLQAAVQSVEWTYSIFWQFCPQQGVIAWSDGYYNGAIKTRKTVQATEESAEEATRQRSQQLRELYDCLAGGDTSQRPSAALSPEDLTEAEWFYLMCVSFSFPPGVGLPGKAYVDRQHIWLTRANKADSTLFSRTILAESAKIQTVVCIPLLDGVVELGTTQRVEEDIGLIQRVKSFFSHCQNPKPSRQALSGHSTSNPTSSAPAYYSPPPFAPPQVGEKEEEEEEEEEEEEEEEEVESDSDQNPVEAMQ...

XP_057800841.1
MCVSFSFPPGVGLPGKAYVDRQHIWLTRANKADSTLFSRTILAESAKIQTVVCIPLLDGVVELGTTQRVEEDIGLIQRVKSFFSHCQNPKPSRQALSGHSTSNPTSSAPAYYSPPPFAPPQVGEKEEEEEEEEEEEEEEEEVESDSDQNPVEAMQLDMSDQDIRAGSPDDSENNLGSNFHHLAASHGGLDTAATMLRWPCKNPIVNATLQPPHSVDIIAEEDTHYSQTVSSLLENQSNRWSKLSSASASAFSKWQAASSS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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