当前解析结果
SmilChr03G003080| 统一新 Gene ID | SmilChr03G003080 |
|---|---|
| 名称 | SmilChr03G003080 |
| 描述 | pentatricopeptide repeat-containing protein At4g02820, mitochondrial |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 47829385 - 47832117 / - |
| NCBI Gene ID | LOC131016224 |
|---|---|
| GeneID | 131016224 |
| locus_tag | - |
| NCBI Name | LOC131016224 |
| 原始查询 | SmilChr03G003080 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At4g02820, mitochondrial |
| 产物 | pentatricopeptide repeat-containing protein At4g02820%2C mitochondrial |
| Arabidopsis | AT4G02820 (AT4G02820)Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828169] identity=56.7; qcov=1.02; evalue=0; confidence=high |
| Rice | Os12g0527900- identity=51.8; qcov=0.902; evalue=0; confidence=high |
| GO | GO:0005515 (protein binding); GO:0005739 (mitochondrion) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016224 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057800849.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057800849.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057800849.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057800849.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057800849.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:47829787 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr3:47829864 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B58,C31 |
Chr3:47829997 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B12,B21,B55,C28,C74 |
Chr3:47830020 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B101,B68,B88,C45 |
Chr3:47830105 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B47 |
Chr3:47830109 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr3:47830125 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C3 |
Chr3:47830488 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr3:47830493 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B102,C53 |
Chr3:47830501 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C65 |
Chr3:47830614 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B12,B21,B55,C28,C74 |
Chr3:47830776 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B101,B68,B88,C45 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057800849.1PF01535
PPR 152-180 aa
PF13812
PPR_3 188-230 aa
PF13041
PPR_2 218-265 aa
PF13812
PPR_3 218-267 aa
PF01535
PPR 221-249 aa
PF01535
PPR 256-284 aa
PF01535
PPR 328-352 aa
PF01535
PPR 364-390 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057800849.1 |
Pfam | PF01535 |
PPR | Repeat | 152 | 180 | 2.6e-28 | 97.0 | PPR repeat |
XP_057800849.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 188 | 230 | 5.5e-20 | 71.9 | Pentatricopeptide repeat domain |
XP_057800849.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 218 | 265 | 1.5e-30 | 105.7 | PPR repeat family |
XP_057800849.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 218 | 267 | 5.5e-20 | 71.9 | Pentatricopeptide repeat domain |
XP_057800849.1 |
Pfam | PF01535 |
PPR | Repeat | 221 | 249 | 2.6e-28 | 97.0 | PPR repeat |
XP_057800849.1 |
Pfam | PF01535 |
PPR | Repeat | 256 | 284 | 2.6e-28 | 97.0 | PPR repeat |
XP_057800849.1 |
Pfam | PF01535 |
PPR | Repeat | 328 | 352 | 2.6e-28 | 97.0 | PPR repeat |
XP_057800849.1 |
Pfam | PF01535 |
PPR | Repeat | 364 | 390 | 2.6e-28 | 97.0 | PPR repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。