当前解析结果
SmilChr03G003093| 统一新 Gene ID | SmilChr03G003093 |
|---|---|
| 名称 | SmilChr03G003093 |
| 描述 | ARM REPEAT PROTEIN INTERACTING WITH ABF2-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 47939639 - 47945835 / - |
| NCBI Gene ID | LOC131016234 |
|---|---|
| GeneID | 131016234 |
| locus_tag | - |
| NCBI Name | LOC131016234 |
| 原始查询 | SmilChr03G003093 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ARM REPEAT PROTEIN INTERACTING WITH ABF2-like |
| 产物 | ARM REPEAT PROTEIN INTERACTING WITH ABF2-like |
| Arabidopsis | AT5G19330 (ARIA)ARM repeat protein interacting with ABF2 [Source:NCBI gene (formerly Entrezgene);Acc:832053] identity=72.9; qcov=0.97; evalue=0; confidence=high |
| Rice | Os05g0398100- identity=74.6; qcov=0.296; evalue=3.28e-110; confidence=weak |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00514 (Arm); PF00651 (BTB) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016234 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057800870.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057800870.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057800870.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057800870.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057800870.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:47940133 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:47940143 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B9,D10 |
Chr3:47940360 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B117,B33,B53 |
Chr3:47942011 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B114,B28 |
Chr3:47942113 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B52,B9 |
Chr3:47942925 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B74,C15,C20,C79 |
Chr3:47942971 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A11,B102,B111,B17,C53 |
Chr3:47943411 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B11 |
Chr3:47943659 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
Chr3:47943987 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B104,B46,C8 |
Chr3:47944184 |
T |
TG |
1bp_insertion | frameshift_variant | 35 | A10,A11,A13,A8,B102,B121,B128,B15,B24,B34,B35,B36,B4,B52,B58,B66,B73,B78,B87,C11,C12,C2,C23,C29,C3,C47,C56,C6,C69,C70,C79,C8,C86,C87,D10 |
Chr3:47944229 |
TCC |
T |
2bp_deletion | frameshift_variant | 33 | A10,A11,A13,A8,B102,B121,B128,B135,B15,B24,B34,B35,B36,B4,B52,B58,B66,B73,B78,B87,C11,C12,C2,C29,C3,C47,C6,C69,C70,C79,C8,C87,D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057800870.1PF00514
Arm 197-226 aa
PF00514
Arm 229-268 aa
PF00651
BTB 537-636 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057800870.1 |
Pfam | PF00514 |
Arm | Repeat | 197 | 226 | 1.3e-41 | 140.0 | Armadillo/beta-catenin-like repeat |
XP_057800870.1 |
Pfam | PF00514 |
Arm | Repeat | 229 | 268 | 1.3e-41 | 140.0 | Armadillo/beta-catenin-like repeat |
XP_057800870.1 |
Pfam | PF00651 |
BTB | Domain | 537 | 636 | 5.3e-25 | 88.4 | BTB/POZ domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。