Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003103`

染色体: Chr03 坐标: 48135930-48142430 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003103`
名称	SmilChr03G003103
描述	ent-copalyl diphosphate synthase, chloroplastic
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	48135930 - 48142430 / `+`

ID 对照

NCBI Gene ID	`LOC131016246`
GeneID	`131016246`
locus_tag	`-`
NCBI Name	`LOC131016246`
原始查询	`SmilChr03G003103`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ent-copalyl diphosphate synthase, chloroplastic
产物	ent-copalyl diphosphate synthase%2C chloroplastic
Arabidopsis	`AT4G02780` (GA1) Terpenoid cyclases/Protein prenyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828182] identity=49.9; qcov=1.04; evalue=0; confidence=high
Rice	`Os02g0278700` (OsCPS1) - identity=50.2; qcov=0.952; evalue=0; confidence=high
GO	GO:0000287 (magnesium ion binding); GO:0009507 (chloroplast); GO:0009686 (gibberellin biosynthetic process); GO:0010333 (terpene synthase activity)
KEGG	smil00904 (Diterpenoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF01397 (Terpene_synth); PF03936 (Terpene_synth_C)
InterPro	-
eggNOG	-
NR	GeneID:131016246

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	0.80000	`XP_057800884.1`
2	Chloroplast stroma	叶绿体基质	0.40000	`XP_057800884.1`
3	Cytoplasm	细胞质	0.20000	`XP_057800884.1`
4	Cytosol	细胞质基质	0.20000	`XP_057800884.1`
5	Nucleus	细胞核	0.00000	`XP_057800884.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:48136101`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B134
`Chr3:48136590`	`AT`	`A`	1bp_deletion	frameshift_variant	97	A1,A11,A16,A18,A19,A2,A20,A23,A3,B1,B10,B101,B103,B104,B105,B109,B111,B115,B119,B120,B121,B122,B125,B127,B128,B130,B135,B15,B17,B18,B19,B2,B21,B22,B25,B3,B31,B37,B4,B49,B5,B56,B58,B59,B6,B63,B64,B65,B68,B69,B70,B72,B8,B82,B83,B84,B87,B88,B9,B95,B96,B97,B98,C1,C10,C21,C22,C28,C30,C31,C34,C42,C43,C45,C47,C49,C50,C53,C54,C57,C59,C64,C66,C67,C70,C73,C74,C77,C80,C81,C82,C84,C87,D11,D5,D8,D9
`Chr3:48136592`	`CA`	`C`	1bp_deletion	frameshift_variant	97	A1,A11,A16,A18,A19,A2,A20,A23,A3,B1,B10,B101,B103,B104,B105,B109,B111,B115,B119,B120,B121,B122,B125,B127,B128,B130,B135,B15,B17,B18,B19,B2,B21,B22,B25,B3,B31,B37,B4,B49,B5,B56,B58,B59,B6,B63,B64,B65,B68,B69,B70,B72,B8,B82,B83,B84,B87,B88,B9,B95,B96,B97,B98,C1,C10,C21,C22,C28,C30,C31,C34,C42,C43,C45,C47,C49,C50,C53,C54,C57,C59,C64,C66,C67,C70,C73,C74,C77,C80,C81,C82,C84,C87,D11,D5,D8,D9
`Chr3:48136671`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr3:48142215`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B125,B88,B9,C45,C73
`Chr3:48142247`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C15
`Chr3:48142282`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800884.1

820 aa

410

820

Terpene_synth

Terpene_synth_C

PF01397 Terpene_synth 294-500 aa PF03936 Terpene_synth_C 583-687 aa

XP_057800885.1

793 aa

396

793

Terpene_synth

Terpene_synth_C

PF01397 Terpene_synth 267-473 aa PF03936 Terpene_synth_C 556-660 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800884.1`	Pfam	`PF01397`	Terpene_synth	Repeat	294	500	9.9e-49	166.3	Terpene synthase, N-terminal domain
`XP_057800884.1`	Pfam	`PF03936`	Terpene_synth_C	Domain	583	687	3.8e-08	33.7	Terpene synthase family, metal binding domain
`XP_057800885.1`	Pfam	`PF01397`	Terpene_synth	Repeat	267	473	8.2e-49	166.6	Terpene synthase, N-terminal domain
`XP_057800885.1`	Pfam	`PF03936`	Terpene_synth_C	Domain	556	660	3.5e-08	33.8	Terpene synthase family, metal binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057944901.1
GGAATCTCTTGGGAAGTCGTTTCTGTCCGTTTCCTTTCCTTAGAGTCTATATAAACCCCTCATTCCTTCTTCTCTCTCACTCCAATTCCTCCCTCTCTCTAAATCAAACAAACATTTTGAAGCATGCCTCTCGCTTCCAATCCCGTCGCCTTCCTCCCATCCTCCACCGCCCACGGCGACCTTCCGGCGGCCGCCTTCTCTCGCTCCTCCGCCGGCTGTCTTCAACTTTGCAGACCACTTACTCCCACTTCTTCTCTTCA...

XM_057944902.1
CTCTTGGGAAGTCGTTTCTGTCCGTTTCCTTTCCTTAGAGTCTATATAAACCCCTCATTCCTTCTTCTCTCTCACTCCAATTCCTCCCTCTCTCTAAATCAAACAAACATTTTGAAGCATGCCTCTCGCTTCCAATCCCGTCGCCTTCCTCCCATCCTCCACCGCCCACGGCGACCTTCCGGCGGCCGCCTTCTCTCGCTCCTCCGCCGGCTGTCTTCAACTTTGCAGACCACTTACTCCCACTTCTTCTCTTCAATGCA...

CDS

2 records

下载 CDS FASTA

LOC131016246
ATGCCTCTCGCTTCCAATCCCGTCGCCTTCCTCCCATCCTCCACCGCCCACGGCGACCTTCCGGCGGCCGCCTTCTCTCGCTCCTCCGCCGGCTGTCTTCAACTTTGCAGACCACTTACTCCCACTTCTTCTCTTCAATGCAATGCAATCTCCAGACCTCGTACAGAAGAGTACATAGATGTGATTCAGAATGGTTTGCCAGTGATAAAGTGGCACGAGATTGTGGAAGATGACGCAGAAAAAGATTCTCCCAAGGTGCG...

Protein

2 records

下载 Protein FASTA

XP_057800884.1
MPLASNPVAFLPSSTAHGDLPAAAFSRSSAGCLQLCRPLTPTSSLQCNAISRPRTEEYIDVIQNGLPVIKWHEIVEDDAEKDSPKVRLSILFCFSCSHTYIYLVTISISISKDKVGELRDAVRSMLRSMGDGEISISPYDTAWVALVADADGDRPQFPSSLHWISTNQLADGSWGDHATFSIFDRIINTLACVVALTSWDLHPDKTHKGILFIKKNIHRLEEENVEHMPIGFEVALPSLIDIAKQLQIDIPSDTRGLREI...

XP_057800885.1
MPLASNPVAFLPSSTAHGDLPAAAFSRSSAGCLQLCRPLTPTSSLQCNAISRPRTEEYIDVIQNGLPVIKWHEIVEDDAEKDSPKDKVGELRDAVRSMLRSMGDGEISISPYDTAWVALVADADGDRPQFPSSLHWISTNQLADGSWGDHATFSIFDRIINTLACVVALTSWDLHPDKTHKGILFIKKNIHRLEEENVEHMPIGFEVALPSLIDIAKQLQIDIPSDTRGLREIYARREIKLKKIPSDILHQMPTTLLHSL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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