Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003131`

染色体: Chr03 坐标: 48484418-48580668 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003131`
名称	SmilChr03G003131
描述	ubiquinone biosynthesis protein COQ4 homolog, mitochondrial-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	48484418 - 48580668 / `+`

ID 对照

NCBI Gene ID	`LOC131016276`
GeneID	`131016276`
locus_tag	`-`
NCBI Name	`LOC131016276`
原始查询	`SmilChr03G003131`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ubiquinone biosynthesis protein COQ4 homolog, mitochondrial-like
产物	ubiquinone biosynthesis protein COQ4 homolog%2C mitochondrial-like
Arabidopsis	`AT2G03690` (AT2G03690) coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein [Source:NCBI gene (formerly Entrezgene);Acc:814897] identity=77.7; qcov=0.982; evalue=1.22e-131; confidence=high
Rice	`Os04g0674200` - identity=78.2; qcov=0.965; evalue=1.31e-132; confidence=high
GO	GO:0005743 (mitochondrial inner membrane); GO:0006744 (ubiquinone biosynthetic process)
KEGG	smil00130 (Ubiquinone and other terpenoid-quinone biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage))
Pfam	PF05019 (Coq4)
InterPro	-
eggNOG	-
NR	GeneID:131016276

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057800906.1`
2	Mitochondrion membrane	线粒体膜	1.00000	`XP_057800906.1`
3	Mitochondrion inner membrane	线粒体内膜	1.00000	`XP_057800906.1`
4	Nucleus	细胞核	0.00000	`XP_057800906.1`
5	Chromosome	染色体	0.00000	`XP_057800906.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:48505172`	`AG`	`A`	1bp_deletion	frameshift_variant	13	A15,B115,B131,B20,B62,B7,B71,B88,C62,C77,C80,C81,C86
`Chr3:48505213`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr3:48505218`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B21,C28,C74
`Chr3:48505252`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B12,B33,B55
`Chr3:48505275`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr3:48505278`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr3:48579946`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A25,B126
`Chr3:48580190`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B117,B53
`Chr3:48580234`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A14,B129,B50,C33
`Chr3:48580345`	`ATG`	`A`	2bp_deletion	frameshift_variant	1	B16
`Chr3:48580345`	`ATG`	`A`	2bp_deletion	CDS_variant	1	B16

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800906.1

228 aa

114

228

Coq4

PF05019 Coq4 5-221 aa

XP_057800907.1

228 aa

114

228

Coq4

PF05019 Coq4 5-221 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800906.1`	Pfam	`PF05019`	Coq4	Family	5	221	2.8e-80	269.5	Coenzyme Q (ubiquinone) biosynthesis protein Coq4
`XP_057800907.1`	Pfam	`PF05019`	Coq4	Family	5	221	2.8e-80	269.5	Coenzyme Q (ubiquinone) biosynthesis protein Coq4

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057944923.1
GATTCTTGTGGAATAAAGAAACTAGTCGAGGACAACAAGAGAAAAGAGAGCAAAGAAGTGTGATCAATAAAGGGGAAACAGACGACGACGAGTGAAGGAGAACAAGAAAAAAGAGCAAGGAAAAAAAAACCTCAGCGTCGCACATATTGGTGCGCTTCAGCGTGGCTTTGGCTTGAGGCGCGGGAGATGATAGGGGGTGGTCGAGTGAAACTCAAGGGATGGCAACAAGCTGCTGTTGCAGTTGGATCAGCTGTTGGAGC...

XM_057944924.1
TAAACACCCATCATCATTCTTCTTGAACCCTAATTCCCCTTCTCCCTCGTCTGCATATTGAATTCCAGATTTTGCATCTTCAATTCCAGAGTTTGGGGACACAACAGCAGATTGAAGAAGAGCCTCAGCGTCGCACATATTGGTGCGCTTCAGCGTGGCTTTGGCTTGAGGCGCGGGAGATGATAGGGGGTGGTCGAGTGAAACTCAAGGGATGGCAACAAGCTGCTGTTGCAGTTGGATCAGCTGTTGGAGCGTTGTTG...

CDS

2 records

下载 CDS FASTA

LOC131016276
ATGATAGGGGGTGGTCGAGTGAAACTCAAGGGATGGCAACAAGCTGCTGTTGCAGTTGGATCAGCTGTTGGAGCGTTGTTGGATCCGCGAAGAGCTGATTTGATAGCTGCTCTTGGGGAGACCACTGGAAAGCCCGCATTTCAAAGGGTTCTTGAGAGAATGAAGACAAGTCCAGAAGGGAGGGCTGTACTACTGGAGCGCCCTCGTGTCATCTCTGCTAATGTAGGGCATGCATGGGACCTTCTGCCAAACACATTTGG...

Protein

2 records

下载 Protein FASTA

XP_057800906.1
MIGGGRVKLKGWQQAAVAVGSAVGALLDPRRADLIAALGETTGKPAFQRVLERMKTSPEGRAVLLERPRVISANVGHAWDLLPNTFGVAYVKFMGSRNFSPDDRPPVRFMETEEIAYVATRAREVHDFWHTLFDLPTNLIGESALKVIEFEQMLLPMCALSVARGTAQFSQSQRNLFYQHYFPWALRAGVRCTDLMCVYYERHFDEDLEDVRRRWGIVPAPPPPLRAA

XP_057800907.1
MIGGGRVKLKGWQQAAVAVGSAVGALLDPRRADLIAALGETTGKPAFQRVLERMKTSPEGRAVLLERPRVISANVGHAWDLLPNTFGVAYVKFMGSRNFSPDDRPPVRFMETEEIAYVATRAREVHDFWHTLFDLPTNLIGESALKVIEFEQMLLPMCALSVARGTAQFSQSQRNLFYQHYFPWALRAGVRCTDLMCVYYERHFDEDLEDVRRRWGIVPAPPPPLRAA

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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