Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003135`

染色体: Chr03 坐标: 48583252-48598056 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003135`
名称	SmilChr03G003135
描述	ubiquinone biosynthesis protein COQ4 homolog, mitochondrial-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	48583252 - 48598056 / `-`

ID 对照

NCBI Gene ID	`LOC131016274`
GeneID	`131016274`
locus_tag	`-`
NCBI Name	`LOC131016274`
原始查询	`SmilChr03G003135`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ubiquinone biosynthesis protein COQ4 homolog, mitochondrial-like
产物	ubiquinone biosynthesis protein COQ4 homolog%2C mitochondrial-like
Arabidopsis	`AT2G03690` (AT2G03690) coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein [Source:NCBI gene (formerly Entrezgene);Acc:814897] identity=79.5; qcov=0.982; evalue=3.59e-136; confidence=high
Rice	`Os04g0674200` - identity=79.7; qcov=0.974; evalue=3.12e-137; confidence=high
GO	GO:0005743 (mitochondrial inner membrane); GO:0006744 (ubiquinone biosynthetic process)
KEGG	smil00130 (Ubiquinone and other terpenoid-quinone biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage))
Pfam	PF05019 (Coq4)
InterPro	-
eggNOG	-
NR	GeneID:131016274

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057800902.1`
2	Mitochondrion membrane	线粒体膜	1.00000	`XP_057800903.1`
3	Mitochondrion inner membrane	线粒体内膜	1.00000	`XP_057800903.1`
4	Chloroplast	叶绿体	0.20000	`XP_057800902.1`
5	Nucleus	细胞核	0.00000	`XP_057800903.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:48583463`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A19,B140,C11,C69,C83
`Chr3:48583782`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A22,B126,B13,C59
`Chr3:48583793`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B117,B53
`Chr3:48583937`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B121,C12,C26
`Chr3:48584709`	`AG`	`A`	1bp_deletion	frameshift_variant	1	C46
`Chr3:48584709`	`AG`	`A`	1bp_deletion	CDS_variant	1	C46
`Chr3:48584744`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B53
`Chr3:48584814`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr3:48584893`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B50,B60
`Chr3:48584894`	`GC`	`G`	1bp_deletion	frameshift_variant	6	B104,B121,B30,C11,C69,C71
`Chr3:48584896`	`ACC`	`A`	2bp_deletion	frameshift_variant	6	B104,B121,B30,C11,C69,C71
`Chr3:48584904`	`GT`	`G`	1bp_deletion	frameshift_variant	6	B104,B121,B30,C11,C69,C71

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800902.1

351 aa

176

351

Coq4

PF05019 Coq4 128-344 aa

XP_057800903.1

228 aa

114

228

Coq4

PF05019 Coq4 5-221 aa

XP_057800904.1

228 aa

114

228

Coq4

PF05019 Coq4 5-221 aa

XP_057800905.1

228 aa

114

228

Coq4

PF05019 Coq4 5-221 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800902.1`	Pfam	`PF05019`	Coq4	Family	128	344	1.2e-81	273.9	Coenzyme Q (ubiquinone) biosynthesis protein Coq4
`XP_057800903.1`	Pfam	`PF05019`	Coq4	Family	5	221	3.2e-82	275.8	Coenzyme Q (ubiquinone) biosynthesis protein Coq4
`XP_057800904.1`	Pfam	`PF05019`	Coq4	Family	5	221	3.2e-82	275.8	Coenzyme Q (ubiquinone) biosynthesis protein Coq4
`XP_057800905.1`	Pfam	`PF05019`	Coq4	Family	5	221	3.2e-82	275.8	Coenzyme Q (ubiquinone) biosynthesis protein Coq4

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057944922.1
TTCTTGAACCCTTATTCCCCTTCTCCCTCGTCTGCATATTGAATTCCAGATTTTGCATCTTCAATTCCAGAGTTTGGGGACACAACAGCAGATTGAAGAAGAGCCTCAGCGCCGCACATATTGGTGCGCTTGAGGCGCGGGAGATGATAGGGGGTGGTCGAGTGAAACTCAAGGGATGGCAGCAAGCTGCTGTTGCAGTTGGATCAGCTGTTGGAGCGTTGTTGGATCCGCGAAGAGCTGATTTGATAGCTGCTCTTGGG...

XM_057944919.1
ATTCAATAAATGACTGGAAGCAGTAGCCTCGTGCTCCATAATACTTTTCATGGCTCCATACGGTAGATCTGATCAAGAAAAGGTGAAAGATTAAGCTTGTAACTTTTGATCATAGACGAATATGAGATATGGGTCGTGGAGTTAGCAGCGGTGGAGGGCAGAGTTCATTGGGTTACTTGTTTGGTAGCGGTGAGGCTCCAAAACCAGTAGTGGGGAAAGCACAAGCTGCACCGAGTGAGAGTATGGTTGCTAGTAAAGAA...

CDS

4 records

下载 CDS FASTA

LOC131016274
ATGGGTCGTGGAGTTAGCAGCGGTGGAGGGCAGAGTTCATTGGGTTACTTGTTTGGTAGCGGTGAGGCTCCAAAACCAGTAGTGGGGAAAGCACAAGCTGCACCGAGTGAGAGTATGGTTGCTAGTAAAGAACCTTCGCCAAAGCCTAATGCCGCTCCTAAGCCAGTAGACGTTAGCAAGCAGATTCCTGCAGGGATTCATAGTAGCACCACCAACAACTACGTCAGAGCAGATGGTCAGAGTACTTGCAATTTTATCAC...

LOC131016274
ATGATAGGGGGTGGTCGAGTGAAACTCAAGGGATGGCAGCAAGCTGCTGTTGCAGTTGGATCAGCTGTTGGAGCGTTGTTGGATCCGCGAAGAGCTGATTTGATAGCTGCTCTTGGGGAGACCACTGGAAAGCCCGCATTTCAAAGGGTTCTTGAGAGAATGAAGACAAGTCCAGAAGGGAGGGCTGTACTACTGGAGCGCCCTCGTGTCATCTCTGCTAACGTAGGGCATGCATGGGACCTTCCGCCAAACACATTTGG...

Protein

4 records

下载 Protein FASTA

XP_057800902.1
MGRGVSSGGGQSSLGYLFGSGEAPKPVVGKAQAAPSESMVASKEPSPKPNAAPKPVDVSKQIPAGIHSSTTNNYVRADGQSTCNFITILHLQFQSLGTQQIEEEPQRRTYWCASAWLWLEAREMIGGGRVKLKGWQQAAVAVGSAVGALLDPRRADLIAALGETTGKPAFQRVLERMKTSPEGRAVLLERPRVISANVGHAWDLPPNTFGAAYAKFMGSRNFSPDDRPPVRFMETEEIAYVATRAREVHDFWHTLFDLPT...

XP_057800903.1
MIGGGRVKLKGWQQAAVAVGSAVGALLDPRRADLIAALGETTGKPAFQRVLERMKTSPEGRAVLLERPRVISANVGHAWDLPPNTFGAAYAKFMGSRNFSPDDRPPVRFMETEEIAYVATRAREVHDFWHTLFDLPTNLIGESALKVIEFEQMLLPMCALSVAGGTARFSQSQRNLFYQHYFPWALRAGVRCTDVMCVYYERHFDEDLEEVRRRWGIVPAPPPPLHAA

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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