Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003169`

染色体: Chr03 坐标: 49044591-49047409 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003169`
名称	SmilChr03G003169
描述	serine/threonine-protein kinase STY13-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	49044591 - 49047409 / `-`

ID 对照

NCBI Gene ID	`LOC131016324`
GeneID	`131016324`
locus_tag	`-`
NCBI Name	`LOC131016324`
原始查询	`SmilChr03G003169`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	serine/threonine-protein kinase STY13-like
产物	serine/threonine-protein kinase STY13-like
Arabidopsis	`AT3G22750` (AT3G22750) Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821846] identity=77.5; qcov=0.94; evalue=5.35e-169; confidence=high
Rice	`Os03g0638800` (OSJNBb0029I19.9) - identity=75.7; qcov=0.94; evalue=3.67e-170; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF17667 (Pkinase_fungal)
InterPro	-
eggNOG	-
NR	GeneID:131016324

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057800992.1`
2	Cytosol	细胞质基质	1.00000	`XP_057800993.1`
3	Cytoplasm	细胞质	0.20000	`XP_057800992.1`
4	Nucleus	细胞核	0.00000	`XP_057800992.1`
5	Chromosome	染色体	0.00000	`XP_057800992.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:49044957`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C38,C39
`Chr3:49045064`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B123
`Chr3:49045117`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B76
`Chr3:49045151`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B117,C82
`Chr3:49045391`	`TA`	`T`	1bp_deletion	frameshift_variant	1	C6
`Chr3:49045391`	`TA`	`T`	1bp_deletion	CDS_variant	1	C6
`Chr3:49045971`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B123
`Chr3:49046260`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B123
`Chr3:49046954`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B20
`Chr3:49046954`	`TC`	`T`	1bp_deletion	CDS_variant	1	B20

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800992.1

369 aa

184

369

PK_Tyr_Ser-Thr

Pkinase

Pkinase_fungal

PF07714 PK_Tyr_Ser-Thr 63-340 aa PF00069 Pkinase 65-338 aa PF17667 Pkinase_fungal 196-272 aa

XP_057800993.1

298 aa

149

298

Pkinase

PK_Tyr_Ser-Thr

Pkinase_fungal

PF00069 Pkinase 32-267 aa PF07714 PK_Tyr_Ser-Thr 32-269 aa PF17667 Pkinase_fungal 125-201 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800992.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	63	340	1.5e-60	205.4	Protein tyrosine and serine/threonine kinase
`XP_057800992.1`	Pfam	`PF00069`	Pkinase	Domain	65	338	1.9e-49	169.2	Protein kinase domain
`XP_057800992.1`	Pfam	`PF17667`	Pkinase_fungal	Domain	196	272	5.3e-06	26.1	Fungal protein kinase
`XP_057800993.1`	Pfam	`PF00069`	Pkinase	Domain	32	267	6.1e-45	154.4	Protein kinase domain
`XP_057800993.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	32	269	1.7e-55	188.9	Protein tyrosine and serine/threonine kinase
`XP_057800993.1`	Pfam	`PF17667`	Pkinase_fungal	Domain	125	201	5.7e-06	26.0	Fungal protein kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057945010.1
CTAAAATTTGTAAAATCTGTCGTGCACAAACACAAGCATTCGGCCCGCAATGTGTTTTCGTGTCCTTCAAAATCTCAATATTGTGTCGCCTTCACATCTCTTTCGCTGAGATGTCATTTCCTCTTCCGTTCTCTCTCTCCCTCTGCAATGCTTCTTGTCCTTCATGCATTTAACTTTTCTCTCCCTGCCTTCTTTCACTATTTATTTTCATGCCTCCACCATTTACTAGTACTACTGCCACTACTCTCACCTTTTTTTTT...

XM_057945009.1
TAAAATCTGTCGTGCACAAACACAAGCATTCGGCCCGCAATGTGTTTTCGTGTCCTTCAAAATCTCAATATTGTGTCGCCTTCACATCTCTTTCGCTGAGATGTCATTTCCTCTTCCGTTCTCTCTCTCCCTCTGCAATGCTTCTTGTCCTTCATGCATTTAACTTTTCTCTCCCTGCCTTCTTTCACTATTTATTTTCATGCCTCCACCATTTACTAGTACTACTGCCACTACTCTCACCTTTTTTTTTCCTTTACCCT...

CDS

2 records

下载 CDS FASTA

LOC131016324
ATGGATTTCAAGAATGTGGAAGAAATGGGAGATGATAATAGAGAGAGTGGTGTGTTTATGAGGGCTGACAGGATTGATTTCAAGACATGGGATGTGCAATTGGAGAAGCATTTGAACCGGGCCTGGCCCAGAGATACCGAGGCCCGCGGGGAGCCCGAGGAATGGGAGATTGATCTGGCTAAGCTTGACATCAAGAATGCCATAGCTCATGGCACCTATGGCACTGTTTATAAAGCTGTTTATCATGCCCAAGATGTTGC...

LOC131016324
ATGGCACCTATGGCACTGTTTATAAAGCTGTTTATCATGCCCAAGATGTTGCTGGTATTGGAGTGGGGGGAGGATGGTATGACCACAGCTGACGAGAGCGATGCTCTTCAGACATCTTTTCGACAAGAAGTAGCCGTTTGGCATAAGCTCGACCATCCTAATGTTACAAAGTTCGTTGGTGCCTCAATCGGAACAACAAATCTTAGGCTACCTTCTGAAGGGACTTTGGGTGCTAGTTTCAATTCGCTTCCATCTAGGGC...

Protein

2 records

下载 Protein FASTA

XP_057800992.1
MDFKNVEEMGDDNRESGVFMRADRIDFKTWDVQLEKHLNRAWPRDTEARGEPEEWEIDLAKLDIKNAIAHGTYGTVYKAVYHAQDVAVKVLEWGEDGMTTADESDALQTSFRQEVAVWHKLDHPNVTKFVGASIGTTNLRLPSEGTLGASFNSLPSRACCVVVEYVPGGTLKKFLIRNSKKKLAFKIVVQLALDLARGLSYLHSKKIVHRDVKTENMLLDANRTLKIADFGVARVEAQNPRDMTGNTGTLGYMAPEVLDG...

XP_057800993.1
MAPMALFIKLFIMPKMLLVLEWGEDGMTTADESDALQTSFRQEVAVWHKLDHPNVTKFVGASIGTTNLRLPSEGTLGASFNSLPSRACCVVVEYVPGGTLKKFLIRNSKKKLAFKIVVQLALDLARGLSYLHSKKIVHRDVKTENMLLDANRTLKIADFGVARVEAQNPRDMTGNTGTLGYMAPEVLDGKPYNRKCDVYSFGICLWEIYCSNMPYPNLSFAEVSAAVVQQNLRPEIPRCCPTPFANIMRRCWDAKPENRP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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