当前解析结果
SmilChr03G003193| 统一新 Gene ID | SmilChr03G003193 |
|---|---|
| 名称 | SmilChr03G003193 |
| 描述 | uncharacterized mitochondrial protein AtMg00810-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 49396254 - 49396766 / + |
| NCBI Gene ID | LOC131018934 |
|---|---|
| GeneID | 131018934 |
| locus_tag | - |
| NCBI Name | LOC131018934 |
| 原始查询 | SmilChr03G003193 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0125300; species=rice; confidence=medium |
| 产物 | hit=Os08g0125300; species=rice; confidence=medium |
| Arabidopsis | ATMG00810- identity=34.3; qcov=1.01; evalue=7.22e-33; confidence=low |
| Rice | Os08g0125300- identity=36.8; qcov=1.01; evalue=2.43e-34; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018934 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057803601.1 |
| 2 | Nucleus | 细胞核 | 0.20000 | XP_057803601.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057803601.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057803601.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057803601.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:49396255 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B123 |
Chr3:49396255 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B123 |
Chr3:49396276 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C43 |
Chr3:49396282 |
T |
TAA |
2bp_insertion | frameshift_variant | 42 | A13,A16,A2,A20,A9,B103,B108,B12,B126,B131,B133,B137,B20,B26,B46,B54,B59,B67,B8,B82,B90,B94,C12,C23,C28,C3,C31,C36,C40,C42,C43,C45,C49,C57,C62,C63,C74,C78,C87,D1,D10,D2 |
Chr3:49396314 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C26 |
Chr3:49396320 |
C |
T |
EMS_canonical_SNV | stop_gained | 34 | A20,A24,A8,B108,B120,B133,B136,B25,B35,B38,B39,B44,B52,B71,B91,B93,B98,C11,C23,C35,C37,C41,C45,C48,C51,C58,C69,C77,C8,C82,C83,C85,D4,D7 |
Chr3:49396331 |
A |
ATG |
2bp_insertion | frameshift_variant | 6 | A14,B51,B6,B85,C65,C81 |
Chr3:49396347 |
C |
T |
EMS_canonical_SNV | stop_gained | 87 | A10,A16,A8,B100,B102,B104,B105,B108,B113,B115,B120,B126,B127,B130,B132,B133,B134,B135,B136,B137,B138,B140,B18,B19,B25,B33,B34,B35,B38,B39,B41,B42,B43,B44,B46,B5,B51,B52,B67,B70,B71,B73,B85,B90,B91,B92,B93,B94,B98,C11,C12,C13,C15,C18,C19,C2,C23,C27,C3,C35,C37,C4,C41,C45,C48,C50,C51,C55,C58,C65,C69,C76,C77,C78,C79,C8,C82,C83,C85,C9,D11,D2,D4,D5,D7,D8,D9 |
Chr3:49396360 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B138,C43,C78,D6 |
Chr3:49396402 |
CTG |
C |
2bp_deletion | frameshift_variant | 55 | A1,A11,A18,A19,A23,A24,A25,A5,A6,B1,B106,B107,B109,B110,B111,B112,B127,B139,B16,B19,B2,B21,B32,B35,B54,B62,B67,B69,B7,B74,B76,B82,B83,B87,B9,B97,C1,C25,C28,C32,C42,C46,C5,C52,C58,C59,C60,C62,C68,C70,C73,C74,C9,D1,D5 |
Chr3:49396443 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B80,C76,D7 |
Chr3:49396469 |
A |
ATG |
2bp_insertion | stop_gained,frameshift_variant | 3 | B100,B26,C33 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。