当前解析结果
SmilChr03G003198| 统一新 Gene ID | SmilChr03G003198 |
|---|---|
| 名称 | SmilChr03G003198 |
| 描述 | calcium-transporting ATPase 12, plasma membrane-type |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 49506467 - 49510273 / - |
| NCBI Gene ID | LOC131016308 |
|---|---|
| GeneID | 131016308 |
| locus_tag | - |
| NCBI Name | LOC131016308 |
| 原始查询 | SmilChr03G003198 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | calcium-transporting ATPase 12, plasma membrane-type |
| 产物 | calcium-transporting ATPase 12%2C plasma membrane-type |
| Arabidopsis | AT3G63380 (AT3G63380)ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein [Source:NCBI gene (formerly Entrezgene);Acc:825513] identity=66.5; qcov=0.988; evalue=0; confidence=high |
| Rice | Os10g0418100 (ACA8)- identity=59.7; qcov=0.913; evalue=0; confidence=high |
| GO | GO:0005388 (P-type calcium transporter activity); GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0043231 (intracellular membrane-bounded organelle); GO:0070588 (calcium ion transmembrane transport) |
| KEGG | - |
| Pfam | PF00122 (E1-E2_ATPase); PF00689 (Cation_ATPase_C); PF00690 (Cation_ATPase_N); PF00702 (Hydrolase); PF13246 (Cation_ATPase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016308 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 0.60000 | XP_057800965.1 |
| 2 | Cell membrane | 细胞膜 | 0.40000 | XP_057800965.1 |
| 3 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057800965.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057800965.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057800965.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:49506770 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,D11 |
Chr3:49507092 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B67 |
Chr3:49507337 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | C64 |
Chr3:49507337 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C64 |
Chr3:49507347 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B111,B17,B50,B60 |
Chr3:49507370 |
GCC |
G |
2bp_deletion | frameshift_variant | 1 | C30 |
Chr3:49507370 |
GCC |
G |
2bp_deletion | CDS_variant | 1 | C30 |
Chr3:49507482 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B86,C59 |
Chr3:49507506 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr3:49507809 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | C34 |
Chr3:49507809 |
AC |
A |
1bp_deletion | CDS_variant | 1 | C34 |
Chr3:49508136 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B36,B45,B61,B77,C26 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057800965.1PF00690
Cation_ATPase_N 109-175 aa
PF00122
E1-E2_ATPase 230-326 aa
PF00702
Hydrolase 449-773 aa
PF13246
Cation_ATPase 488-662 aa
PF00689
Cation_ATPase_C 844-1014 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057800965.1 |
Pfam | PF00690 |
Cation_ATPase_N | Domain | 109 | 175 | 3.8e-12 | 46.4 | Cation transporter/ATPase, N-terminus |
XP_057800965.1 |
Pfam | PF00122 |
E1-E2_ATPase | Domain | 230 | 326 | 5.5e-21 | 75.0 | P-type ATPase actuator domain |
XP_057800965.1 |
Pfam | PF00702 |
Hydrolase | Domain | 449 | 773 | 3.6e-13 | 51.1 | haloacid dehalogenase-like hydrolase |
XP_057800965.1 |
Pfam | PF13246 |
Cation_ATPase | Family | 488 | 662 | 1e-31 | 110.9 | P-type ATPase, cytoplasmic domain N |
XP_057800965.1 |
Pfam | PF00689 |
Cation_ATPase_C | Family | 844 | 1014 | 1e-46 | 159.6 | Cation transporting ATPase, C-terminus |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。