Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003201`

染色体: Chr03 坐标: 49565489-49571966 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003201`
名称	SmilChr03G003201
描述	peptidyl-prolyl cis-trans isomerase CYP63-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	49565489 - 49571966 / `+`

ID 对照

NCBI Gene ID	`LOC131016346`
GeneID	`131016346`
locus_tag	`-`
NCBI Name	`LOC131016346`
原始查询	`SmilChr03G003201`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	peptidyl-prolyl cis-trans isomerase CYP63-like
产物	peptidyl-prolyl cis-trans isomerase CYP63-like
Arabidopsis	`AT3G63400` (AT3G63400) Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein [Source:NCBI gene (formerly Entrezgene);Acc:825515] identity=70.4; qcov=0.321; evalue=2.79e-103; confidence=low
Rice	`Os06g0216800` (OsCYP40a) - identity=68.2; qcov=0.249; evalue=3.19e-76; confidence=weak
GO	GO:0000413 (protein peptidyl-prolyl isomerization); GO:0003755 (peptidyl-prolyl cis-trans isomerase activity); GO:0006457 (protein folding)
KEGG	-
Pfam	PF00160 (Pro_isomerase)
InterPro	-
eggNOG	-
NR	GeneID:131016346

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057801020.1`
2	Nucleoplasm	核质	1.00000	`XP_057801020.1`
3	Nuclear speckle	核斑点	0.80000	`XP_057801020.1`
4	Chromosome	染色体	0.20000	`XP_057801020.1`
5	Centromere	着丝粒	0.00000	`XP_057801020.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:49568569`	`C`	`T`	EMS_canonical_SNV	stop_gained	3	B6,C10,C67
`Chr3:49568569`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B6,C10,C67
`Chr3:49569019`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B38,B39,B5,C65,C79
`Chr3:49569141`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B19
`Chr3:49569193`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B59
`Chr3:49569232`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B19
`Chr3:49570051`	`C`	`CG`	1bp_insertion	frameshift_variant	4	B36,C16,C37,C6
`Chr3:49570051`	`C`	`CG`	1bp_insertion	CDS_variant	4	B36,C16,C37,C6
`Chr3:49570085`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B82,C42
`Chr3:49570108`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B76
`Chr3:49570345`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B94
`Chr3:49570652`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801020.1

694 aa

347

694

Pro_isomerase

PF00160 Pro_isomerase 12-173 aa

XP_057801021.1

694 aa

347

694

Pro_isomerase

PF00160 Pro_isomerase 12-173 aa

XP_057801022.1

694 aa

347

694

Pro_isomerase

PF00160 Pro_isomerase 12-173 aa

XP_057801023.1

694 aa

347

694

Pro_isomerase

PF00160 Pro_isomerase 12-173 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801020.1`	Pfam	`PF00160`	Pro_isomerase	Domain	12	173	2.6e-48	165.0	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
`XP_057801021.1`	Pfam	`PF00160`	Pro_isomerase	Domain	12	173	2.6e-48	165.0	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
`XP_057801022.1`	Pfam	`PF00160`	Pro_isomerase	Domain	12	173	2.6e-48	165.0	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
`XP_057801023.1`	Pfam	`PF00160`	Pro_isomerase	Domain	12	173	2.6e-48	165.0	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057945040.1
AGTAAACAAGTTACGGAACCAGCAATTTATACCCGTGTTTTTACCCTTTTAACCACGAATCAGATATGCATAAAAATCAAAGCACAAGATTCCTGAAGTAGCAAAAGATTTTCTCCAAATTTTATTTCTGCTGCTGTTGCGAGGGCCGTCGGCTCTAATTTTCGCAGTACTCGTGTCTCTTGGCTTGCTCAGAAAGTAGGGACTGCTATTCTAAAATTGTAAGCATTATGAAGAAGACAAAAAACCCAATGGTTTTCTTG...

XM_057945037.1
CCCTTTTAACCACGAATCAGATATGCATAAAAATCAAAGCACAAGATTCCTGAAGTAGCAAAAGATTTTCTCCAAATTTTATTTCTGCTGCTGTTGCGAGGGCCGTCGGCTCTAATTTTCGCAGTACTCGTGTCTCTTGGCTTGCTCAGAAAGTAGGGATTAGAGCAAGGTATTTCTTTACAGGGACTGCTATTCTAAAATTGTAAGCATTATGAAGAAGACAAAAAACCCAATGGTTTTCTTGGATCTTTCCATGGATG...

CDS

4 records

下载 CDS FASTA

LOC131016346
ATGAAGAAGACAAAAAACCCAATGGTTTTCTTGGATCTTTCCATGGATGGGGATGCTGCTGAAAGAATTATTATTGAGTTGTTTGCTGATGTTGTCCCTAAAACTGCTGAAAATTTCCGGGCTCTCTGCACGGGTGAGAAAGGTGTTGGAGTCTCAACAGGGAAACCTCTGCACTACAAGGGTTCCACATTTCATCGCATAATCAAAGGGTTTATGGCACAAGGCGGTGACTTTTCAAAAGGAAATGGAACTGGTGGAGA...

Protein

4 records

下载 Protein FASTA

XP_057801020.1
MKKTKNPMVFLDLSMDGDAAERIIIELFADVVPKTAENFRALCTGEKGVGVSTGKPLHYKGSTFHRIIKGFMAQGGDFSKGNGTGGESIYGGKFADENFKLDHTEAGLLSMANGGPNTNGSQFFILFKRQPHLDGKHVVFGNVVSGMDVVKKMEQLGTADGRPVGIVKIVDCGEMSDAKMENLVVADKVKKKKSAKEVAINDGSDSHAKRKQKASTKDKRRKRSYSSSGSDSSGADSDSYSSESDSYSDSESDASSESDS...

XP_057801021.1
MKKTKNPMVFLDLSMDGDAAERIIIELFADVVPKTAENFRALCTGEKGVGVSTGKPLHYKGSTFHRIIKGFMAQGGDFSKGNGTGGESIYGGKFADENFKLDHTEAGLLSMANGGPNTNGSQFFILFKRQPHLDGKHVVFGNVVSGMDVVKKMEQLGTADGRPVGIVKIVDCGEMSDAKMENLVVADKVKKKKSAKEVAINDGSDSHAKRKQKASTKDKRRKRSYSSSGSDSSGADSDSYSSESDSYSDSESDASSESDS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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