当前解析结果
SmilChr03G003226| 统一新 Gene ID | SmilChr03G003226 |
|---|---|
| 名称 | SmilChr03G003226 |
| 描述 | uncharacterized SmilChr03G003226 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 49938135 - 49940369 / + |
| NCBI Gene ID | LOC131018941 |
|---|---|
| GeneID | 131018941 |
| locus_tag | - |
| NCBI Name | LOC131018941 |
| 原始查询 | SmilChr03G003226 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0202300; species=rice; confidence=low |
| 产物 | hit=Os08g0202300; species=rice; confidence=low |
| Arabidopsis | ATMG00860- identity=27.4; qcov=0.167; evalue=2.16e-09; confidence=weak |
| Rice | Os08g0202300- identity=29.9; qcov=0.374; evalue=7.06e-40; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF00665 (rve); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018941 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057803607.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057803607.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057803607.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057803607.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057803607.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:49938159 |
C |
T |
EMS_canonical_SNV | stop_gained | 3 | B140,C53,C82 |
Chr3:49938159 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B140,C53,C82 |
Chr3:49938176 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C23 |
Chr3:49938180 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C80 |
Chr3:49938193 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B11,B129 |
Chr3:49938206 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C54 |
Chr3:49938209 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B107,B140,B22 |
Chr3:49938214 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B129,B60 |
Chr3:49938434 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B138,B20,C41,C51 |
Chr3:49938504 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D5 |
Chr3:49938622 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A7 |
Chr3:49938627 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B6 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803607.1PF00078
RVT_1 1-115 aa
PF17919
RT_RNaseH_2 178-276 aa
PF17917
RT_RNaseH 207-305 aa
PF13456
RVT_3 340-457 aa
PF17921
Integrase_H2C2 548-599 aa
PF00665
rve 614-712 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803607.1 |
Pfam | PF00078 |
RVT_1 | Domain | 1 | 115 | 1.1e-23 | 84.9 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057803607.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 178 | 276 | 3.5e-20 | 72.6 | RNase H-like domain found in reverse transcriptase |
XP_057803607.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 207 | 305 | 1.4e-13 | 51.6 | RNase H-like domain found in reverse transcriptase |
XP_057803607.1 |
Pfam | PF13456 |
RVT_3 | Domain | 340 | 457 | 5.5e-17 | 62.6 | Reverse transcriptase-like |
XP_057803607.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 548 | 599 | 4.2e-10 | 40.3 | Integrase zinc binding domain |
XP_057803607.1 |
Pfam | PF00665 |
rve | Domain | 614 | 712 | 2.7e-19 | 70.0 | Integrase core domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。