Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003237`

染色体: Chr03 坐标: 50272795-50275365 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003237`
名称	SmilChr03G003237
描述	uncharacterized SmilChr03G003237
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	50272795 - 50275365 / `+`

ID 对照

NCBI Gene ID	`LOC131016378`
GeneID	`131016378`
locus_tag	`-`
NCBI Name	`LOC131016378`
原始查询	`SmilChr03G003237`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:819629]; symbol=TPR10; hit=AT3G04710; species=arabidopsis; confidence=low
产物	ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:819629]; symbol=TPR10; hit=AT3G04710; species=arabidopsis; confidence=low
Arabidopsis	`AT3G04710` (TPR10) ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:819629] identity=33.8; qcov=0.973; evalue=1.01e-61; confidence=low
Rice	`Os05g0103600` - identity=34; qcov=0.894; evalue=1.66e-60; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13857 (Ank_5)
InterPro	-
eggNOG	-
NR	GeneID:131016378

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057801050.1`
2	Nucleus	细胞核	0.80000	`XP_057801050.1`
3	Chromosome	染色体	0.00000	`XP_057801050.1`
4	Centromere	着丝粒	0.00000	`XP_057801050.1`
5	Chromatin	染色质	0.00000	`XP_057801050.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:50272891`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C58,C85
`Chr3:50273149`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr3:50273169`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B139
`Chr3:50274633`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B58,C31
`Chr3:50274892`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A25
`Chr3:50274953`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr3:50275088`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C11,C69

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801050.1

444 aa

222

444

Ank_2

Ank

Ank_4

Ank

Ank_4

Ank_5

Ank_2

Ank

Ank_3

Ank_4

Ank

Ank_2

PF12796 Ank_2 32-109 aa PF00023 Ank 51-80 aa PF13637 Ank_4 55-105 aa PF00023 Ank 85-109 aa PF13637 Ank_4 100-138 aa PF13857 Ank_5 104-157 aa PF12796 Ank_2 114-177 aa PF00023 Ank 118-143 aa PF13606 Ank_3 118-143 aa PF13637 Ank_4 122-170 aa PF00023 Ank 152-177 aa PF12796 Ank_2 186-243 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801050.1`	Pfam	`PF12796`	Ank_2	Repeat	32	109	2.6e-35	121.5	Ankyrin repeats (3 copies)
`XP_057801050.1`	Pfam	`PF00023`	Ank	Repeat	51	80	5.6e-32	108.7	Ankyrin repeat
`XP_057801050.1`	Pfam	`PF13637`	Ank_4	Repeat	55	105	4.9e-25	87.8	Ankyrin repeats (many copies)
`XP_057801050.1`	Pfam	`PF00023`	Ank	Repeat	85	109	5.6e-32	108.7	Ankyrin repeat
`XP_057801050.1`	Pfam	`PF13637`	Ank_4	Repeat	100	138	4.9e-25	87.8	Ankyrin repeats (many copies)
`XP_057801050.1`	Pfam	`PF13857`	Ank_5	Repeat	104	157	6.5e-16	59.0	Ankyrin repeats (many copies)
`XP_057801050.1`	Pfam	`PF12796`	Ank_2	Repeat	114	177	2.6e-35	121.5	Ankyrin repeats (3 copies)
`XP_057801050.1`	Pfam	`PF00023`	Ank	Repeat	118	143	5.6e-32	108.7	Ankyrin repeat
`XP_057801050.1`	Pfam	`PF13606`	Ank_3	Repeat	118	143	4.4e-26	88.5	Ankyrin repeat
`XP_057801050.1`	Pfam	`PF13637`	Ank_4	Repeat	122	170	4.9e-25	87.8	Ankyrin repeats (many copies)
`XP_057801050.1`	Pfam	`PF00023`	Ank	Repeat	152	177	5.6e-32	108.7	Ankyrin repeat
`XP_057801050.1`	Pfam	`PF12796`	Ank_2	Repeat	186	243	2.6e-35	121.5	Ankyrin repeats (3 copies)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057945067.1
ACAACTCCTTACGGCTCTTTTTTGGCGCTATATAAACTAGCTGGAGCGGTTACTCTCTCACATTTTCAAGACTTGAATGCCATGGATTCTCTTTCTCCCTCTGACATTGGTGCTCTGATTTCGAAGGCTGCAGCTGAGGGAGACCCTAAACAACTCAGGGAGATCAGAAAGAAGTTTGAGACAGTCAGAGACTTAAAGCAAATCTGCGATGTATACAGTGACTTCGCTACGGGCCGGAGAGCCTTGCACTACGCGGCTGA...

CDS

1 records

下载 CDS FASTA

LOC131016378
ATGGATTCTCTTTCTCCCTCTGACATTGGTGCTCTGATTTCGAAGGCTGCAGCTGAGGGAGACCCTAAACAACTCAGGGAGATCAGAAAGAAGTTTGAGACAGTCAGAGACTTAAAGCAAATCTGCGATGTATACAGTGACTTCGCTACGGGCCGGAGAGCCTTGCACTACGCGGCTGAAATGGGAAATTTGGTGATTTGCGAAATCTTGGTTGAGAAGTTCGGAGCCTTTCTTGATATCCCGTCTTACAGCGGGGATAC...

Protein

1 records

下载 Protein FASTA

XP_057801050.1
MDSLSPSDIGALISKAAAEGDPKQLREIRKKFETVRDLKQICDVYSDFATGRRALHYAAEMGNLVICEILVEKFGAFLDIPSYSGDTPLLEAAKGEHVKVVEYLINHNALHQVPNKKGFTALHYAVLKGNKQLMEILLANGAPTEIDSVDGTPLQIAASLGNLKAVKLLLRNGATPSSDTSSIMGSPLISAIKARSFECVKCLLKAKANPEKCLYGLTPLSHAAKERDTRYLLSLLDAGAKPDNFHGRVKAIEIAAIAEN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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