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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G003239

染色体: Chr03 坐标: 50286890-50290839 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G003239
名称SmilChr03G003239
描述uncharacterized SmilChr03G003239
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向50286890 - 50290839 / +

ID 对照

NCBI Gene IDLOC131016380
GeneID131016380
locus_tag-
NCBI NameLOC131016380
原始查询SmilChr03G003239

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述hit=Os05g0103600; species=rice; confidence=low
产物hit=Os05g0103600; species=rice; confidence=low
ArabidopsisAT3G04710 (TPR10)
ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:819629]
identity=31.7; qcov=0.92; evalue=2.68e-54; confidence=low
RiceOs05g0103600
-
identity=34.3; qcov=0.909; evalue=5.26e-60; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4)
InterPro-
eggNOG-
NRGeneID:131016380

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057801052.1
2 Cytoplasm 细胞质 1.00000 XP_057801053.1
3 Chromosome 染色体 0.00000 XP_057801052.1
4 Centromere 着丝粒 0.00000 XP_057801052.1
5 Chromatin 染色质 0.00000 XP_057801052.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:50287195 A AGT 2bp_insertion stop_gained,frameshift_variant 73 A14,A19,A20,A5,B10,B100,B106,B108,B121,B126,B130,B132,B15,B16,B19,B21,B25,B37,B38,B39,B44,B46,B5,B56,B58,B6,B64,B66,B69,B75,B76,B82,B84,B85,B87,B9,B90,B92,B94,B96,B99,C1,C12,C14,C17,C22,C23,C26,C28,C29,C33,C35,C4,C42,C43,C45,C53,C57,C58,C64,C65,C66,C67,C74,C77,C78,C79,C80,C82,C84,D2,D5,D8
Chr3:50287196 G A EMS_canonical_SNV CDS_variant 3 B110,B125,B138
Chr3:50287223 TTC T 2bp_deletion frameshift_variant 74 A16,A2,A21,A3,A7,B10,B101,B102,B11,B117,B118,B124,B132,B135,B136,B137,B15,B16,B23,B24,B26,B28,B29,B30,B33,B35,B37,B38,B39,B4,B40,B42,B43,B49,B50,B52,B53,B6,B60,B63,B64,B76,B79,B8,B80,B83,B9,B91,B95,C11,C13,C16,C18,C2,C22,C24,C29,C34,C39,C40,C43,C48,C52,C54,C6,C61,C63,C69,C70,C76,C86,D2,D3,D4
Chr3:50287267 C T EMS_canonical_SNV CDS_variant 2 B111,C66
Chr3:50287417 C T EMS_canonical_SNV CDS_variant 4 B126,C31,C77,C9
Chr3:50287581 G A EMS_canonical_SNV CDS_variant 1 B31
Chr3:50287618 C T EMS_canonical_SNV CDS_variant 4 B59,B74,B81,C38
Chr3:50287620 G A EMS_canonical_SNV CDS_variant 3 B48,B9,C81
Chr3:50287629 G A EMS_canonical_SNV CDS_variant 3 A11,B31,B94
Chr3:50288047 GC G 1bp_deletion frameshift_variant 82 A10,A16,A18,A22,A3,A4,A9,B101,B104,B105,B106,B11,B110,B114,B117,B119,B121,B123,B134,B137,B26,B29,B32,B33,B35,B36,B39,B41,B43,B46,B52,B53,B57,B60,B66,B72,B75,B79,B8,B83,B84,B86,B88,B91,B94,B96,B99,C11,C14,C17,C2,C22,C25,C27,C28,C30,C33,C37,C4,C42,C44,C48,C51,C52,C53,C54,C55,C58,C60,C61,C62,C68,C70,C72,C75,C77,C81,C82,C84,C86,D11,D2
Chr3:50288054 G GAA 2bp_insertion frameshift_variant 85 A10,A16,A18,A22,A3,A4,A9,B101,B104,B105,B106,B11,B110,B114,B117,B119,B121,B123,B134,B137,B26,B29,B30,B32,B33,B35,B36,B39,B41,B43,B46,B52,B53,B55,B57,B60,B66,B72,B75,B79,B8,B83,B84,B86,B88,B91,B94,B96,B99,C11,C13,C14,C17,C2,C22,C25,C27,C28,C30,C33,C37,C4,C42,C44,C48,C51,C52,C53,C54,C55,C58,C60,C61,C62,C68,C70,C72,C75,C77,C81,C82,C84,C86,D11,D2
Chr3:50288055 G A EMS_canonical_SNV CDS_variant 4 A1,B118,C79,C83

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801052.1
455 aa
N
1
228
455
Ank_2
Ank
Ank_3
Ank_4
Ank_2
Ank
Ank_4
Ank_2
Ank_3
Ank
Ank_2
Ank
Ank
C
PF12796 Ank_2 63-132 aa PF00023 Ank 71-92 aa PF13606 Ank_3 71-99 aa PF13637 Ank_4 75-125 aa PF12796 Ank_2 104-166 aa PF00023 Ank 106-133 aa PF13637 Ank_4 110-158 aa PF12796 Ank_2 135-197 aa PF13606 Ank_3 138-165 aa PF00023 Ank 138-166 aa PF12796 Ank_2 170-224 aa PF00023 Ank 172-197 aa PF00023 Ank 235-263 aa
XP_057801053.1
440 aa
N
1
220
440
Ank_2
Ank
Ank_3
Ank_4
Ank_2
Ank
Ank_4
Ank_2
Ank_3
Ank
Ank_2
Ank
Ank_2
Ank
C
PF12796 Ank_2 63-132 aa PF00023 Ank 71-92 aa PF13606 Ank_3 71-99 aa PF13637 Ank_4 75-125 aa PF12796 Ank_2 104-166 aa PF00023 Ank 106-133 aa PF13637 Ank_4 110-158 aa PF12796 Ank_2 135-197 aa PF13606 Ank_3 138-165 aa PF00023 Ank 138-166 aa PF12796 Ank_2 170-224 aa PF00023 Ank 172-197 aa PF12796 Ank_2 209-288 aa PF00023 Ank 235-263 aa
XP_057801054.1
439 aa
N
1
220
439
Ank_2
Ank
Ank_3
Ank_4
Ank_2
Ank
Ank_4
Ank_2
Ank_3
Ank
Ank_2
Ank
Ank_2
Ank
C
PF12796 Ank_2 63-132 aa PF00023 Ank 71-92 aa PF13606 Ank_3 71-99 aa PF13637 Ank_4 75-125 aa PF12796 Ank_2 104-166 aa PF00023 Ank 106-133 aa PF13637 Ank_4 110-158 aa PF12796 Ank_2 135-197 aa PF13606 Ank_3 138-165 aa PF00023 Ank 138-166 aa PF12796 Ank_2 170-224 aa PF00023 Ank 172-197 aa PF12796 Ank_2 209-288 aa PF00023 Ank 235-263 aa
XP_057801055.1
439 aa
N
1
220
439
Ank_2
Ank
Ank_3
Ank_4
Ank_2
Ank
Ank_4
Ank_2
Ank_3
Ank
Ank_2
Ank
Ank_2
Ank
C
PF12796 Ank_2 63-132 aa PF00023 Ank 71-92 aa PF13606 Ank_3 71-99 aa PF13637 Ank_4 75-125 aa PF12796 Ank_2 104-166 aa PF00023 Ank 106-133 aa PF13637 Ank_4 110-158 aa PF12796 Ank_2 135-197 aa PF13606 Ank_3 138-165 aa PF00023 Ank 138-166 aa PF12796 Ank_2 170-224 aa PF00023 Ank 172-197 aa PF12796 Ank_2 209-288 aa PF00023 Ank 235-263 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057801052.1 Pfam PF12796 Ank_2 Repeat 63 132 1e-49 167.8 Ankyrin repeats (3 copies)
XP_057801052.1 Pfam PF00023 Ank Repeat 71 92 9.7e-35 117.4 Ankyrin repeat
XP_057801052.1 Pfam PF13606 Ank_3 Repeat 71 99 2.5e-28 95.3 Ankyrin repeat
XP_057801052.1 Pfam PF13637 Ank_4 Repeat 75 125 3.4e-22 78.7 Ankyrin repeats (many copies)
XP_057801052.1 Pfam PF12796 Ank_2 Repeat 104 166 1e-49 167.8 Ankyrin repeats (3 copies)
XP_057801052.1 Pfam PF00023 Ank Repeat 106 133 9.7e-35 117.4 Ankyrin repeat
XP_057801052.1 Pfam PF13637 Ank_4 Repeat 110 158 3.4e-22 78.7 Ankyrin repeats (many copies)
XP_057801052.1 Pfam PF12796 Ank_2 Repeat 135 197 1e-49 167.8 Ankyrin repeats (3 copies)
XP_057801052.1 Pfam PF13606 Ank_3 Repeat 138 165 2.5e-28 95.3 Ankyrin repeat
XP_057801052.1 Pfam PF00023 Ank Repeat 138 166 9.7e-35 117.4 Ankyrin repeat
XP_057801052.1 Pfam PF12796 Ank_2 Repeat 170 224 1e-49 167.8 Ankyrin repeats (3 copies)
XP_057801052.1 Pfam PF00023 Ank Repeat 172 197 9.7e-35 117.4 Ankyrin repeat
XP_057801052.1 Pfam PF00023 Ank Repeat 235 263 9.7e-35 117.4 Ankyrin repeat
XP_057801053.1 Pfam PF12796 Ank_2 Repeat 63 132 8.6e-50 168.0 Ankyrin repeats (3 copies)
XP_057801053.1 Pfam PF00023 Ank Repeat 71 92 7.3e-35 117.8 Ankyrin repeat
XP_057801053.1 Pfam PF13606 Ank_3 Repeat 71 99 2e-28 95.7 Ankyrin repeat
XP_057801053.1 Pfam PF13637 Ank_4 Repeat 75 125 2.8e-22 79.0 Ankyrin repeats (many copies)
XP_057801053.1 Pfam PF12796 Ank_2 Repeat 104 166 8.6e-50 168.0 Ankyrin repeats (3 copies)
XP_057801053.1 Pfam PF00023 Ank Repeat 106 133 7.3e-35 117.8 Ankyrin repeat
XP_057801053.1 Pfam PF13637 Ank_4 Repeat 110 158 2.8e-22 79.0 Ankyrin repeats (many copies)
XP_057801053.1 Pfam PF12796 Ank_2 Repeat 135 197 8.6e-50 168.0 Ankyrin repeats (3 copies)
XP_057801053.1 Pfam PF13606 Ank_3 Repeat 138 165 2e-28 95.7 Ankyrin repeat
XP_057801053.1 Pfam PF00023 Ank Repeat 138 166 7.3e-35 117.8 Ankyrin repeat
XP_057801053.1 Pfam PF12796 Ank_2 Repeat 170 224 8.6e-50 168.0 Ankyrin repeats (3 copies)
XP_057801053.1 Pfam PF00023 Ank Repeat 172 197 7.3e-35 117.8 Ankyrin repeat
XP_057801053.1 Pfam PF12796 Ank_2 Repeat 209 288 8.6e-50 168.0 Ankyrin repeats (3 copies)
XP_057801053.1 Pfam PF00023 Ank Repeat 235 263 7.3e-35 117.8 Ankyrin repeat
XP_057801054.1 Pfam PF12796 Ank_2 Repeat 63 132 8.7e-50 168.0 Ankyrin repeats (3 copies)
XP_057801054.1 Pfam PF00023 Ank Repeat 71 92 6.6e-35 117.9 Ankyrin repeat
XP_057801054.1 Pfam PF13606 Ank_3 Repeat 71 99 1.8e-28 95.8 Ankyrin repeat
XP_057801054.1 Pfam PF13637 Ank_4 Repeat 75 125 2.8e-22 79.0 Ankyrin repeats (many copies)
XP_057801054.1 Pfam PF12796 Ank_2 Repeat 104 166 8.7e-50 168.0 Ankyrin repeats (3 copies)
XP_057801054.1 Pfam PF00023 Ank Repeat 106 133 6.6e-35 117.9 Ankyrin repeat
XP_057801054.1 Pfam PF13637 Ank_4 Repeat 110 158 2.8e-22 79.0 Ankyrin repeats (many copies)
XP_057801054.1 Pfam PF12796 Ank_2 Repeat 135 197 8.7e-50 168.0 Ankyrin repeats (3 copies)
XP_057801054.1 Pfam PF13606 Ank_3 Repeat 138 165 1.8e-28 95.8 Ankyrin repeat
XP_057801054.1 Pfam PF00023 Ank Repeat 138 166 6.6e-35 117.9 Ankyrin repeat
XP_057801054.1 Pfam PF12796 Ank_2 Repeat 170 224 8.7e-50 168.0 Ankyrin repeats (3 copies)
XP_057801054.1 Pfam PF00023 Ank Repeat 172 197 6.6e-35 117.9 Ankyrin repeat
XP_057801054.1 Pfam PF12796 Ank_2 Repeat 209 288 8.7e-50 168.0 Ankyrin repeats (3 copies)
XP_057801054.1 Pfam PF00023 Ank Repeat 235 263 6.6e-35 117.9 Ankyrin repeat
XP_057801055.1 Pfam PF12796 Ank_2 Repeat 63 132 8.7e-50 168.0 Ankyrin repeats (3 copies)
XP_057801055.1 Pfam PF00023 Ank Repeat 71 92 7e-35 117.8 Ankyrin repeat
XP_057801055.1 Pfam PF13606 Ank_3 Repeat 71 99 2e-28 95.6 Ankyrin repeat
XP_057801055.1 Pfam PF13637 Ank_4 Repeat 75 125 2.8e-22 79.0 Ankyrin repeats (many copies)
XP_057801055.1 Pfam PF12796 Ank_2 Repeat 104 166 8.7e-50 168.0 Ankyrin repeats (3 copies)
XP_057801055.1 Pfam PF00023 Ank Repeat 106 133 7e-35 117.8 Ankyrin repeat
XP_057801055.1 Pfam PF13637 Ank_4 Repeat 110 158 2.8e-22 79.0 Ankyrin repeats (many copies)
XP_057801055.1 Pfam PF12796 Ank_2 Repeat 135 197 8.7e-50 168.0 Ankyrin repeats (3 copies)
XP_057801055.1 Pfam PF13606 Ank_3 Repeat 138 165 2e-28 95.6 Ankyrin repeat
XP_057801055.1 Pfam PF00023 Ank Repeat 138 166 7e-35 117.8 Ankyrin repeat
XP_057801055.1 Pfam PF12796 Ank_2 Repeat 170 224 8.7e-50 168.0 Ankyrin repeats (3 copies)
XP_057801055.1 Pfam PF00023 Ank Repeat 172 197 7e-35 117.8 Ankyrin repeat
XP_057801055.1 Pfam PF12796 Ank_2 Repeat 209 288 8.7e-50 168.0 Ankyrin repeats (3 copies)
XP_057801055.1 Pfam PF00023 Ank Repeat 235 263 7e-35 117.8 Ankyrin repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057945069.1
TTATTTTTTGTAGCGGTAGCCGGTTGGGAATATGAAACCTGAAATGCATATGCTACATAGAAAGAGTGAAACGTACGGATGCGAGAACGGCATAAGAGCTTTGAATTTAAAAACCAAACAGATGCCATCTCCAGCCGTACACCGGCAGCAGATGCCATCTCCGTCAATCTCAGCTAAGCCACGATCGCCTTTCTATTCATCTTCATCTTCTACTTAGGGCTTCTGATTTTGAGAAATTTTGCTCTTTGGTCGTATTAAAT...
XM_057945072.1
GAAAGAGTGAAACGTACGGATGCGAGAACGGCATAAGAGCTTTGAATTTAAAAACCAAACAGATGCCATCTCCAGCCGTACACCGGCAGCAGATGCCATCTCCGTCAATCTCAGCTAAGCCACGATCGCCTTTCTATTCATCTTCATCTTCTACTTAGGGCTTCTGATTTTGAGAAATTTTGCTCTTTGGTCGTATTAAATGCGACAAGCCAAATTATTCTGTAAAGTAAACCGCATGCTTTATGAAGACACAATCTATA...

CDS

4 records

下载 CDS FASTA
LOC131016380
ATGAAGACACAATCTATAAATAAGATGGAAGTTTCTCACATATTCTACAACTCAAACCCCATGGCCATGGATTCTACTTCTGAAATTGGTGCACTGATAATTGAGGCTGCTGCTACTGGAGACCTCCCAACACTTTGGAAGATCAAAAAGAAGGTTGATGATGACCAACAGTTCCGGAGAATATGTGATGAATATAGCGACTTCTCCACTGGCCGGAATGTGTTGCATCACGCGGCTGAAGTCGGACATTTTGATATTTG...
LOC131016380
ATGAAGACACAATCTATAAATAAGATGGAAGTTTCTCACATATTCTACAACTCAAACCCCATGGCCATGGATTCTACTTCTGAAATTGGTGCACTGATAATTGAGGCTGCTGCTACTGGAGACCTCCCAACACTTTGGAAGATCAAAAAGAAGGTTGATGATGACCAACAGTTCCGGAGAATATGTGATGAATATAGCGACTTCTCCACTGGCCGGAATGTGTTGCATCACGCGGCTGAAGTCGGACATTTTGATATTTG...

Protein

4 records

下载 Protein FASTA
XP_057801052.1
MKTQSINKMEVSHIFYNSNPMAMDSTSEIGALIIEAAATGDLPTLWKIKKKVDDDQQFRRICDEYSDFSTGRNVLHHAAEVGHFDICRFLIKIVKVYINAWTYKRDTPLIEAAKGEHVKLVEYLIKQGASISSGNSKGYTALHYAVLKDNRELMKLLVIKGARIDADSMEGTPLQIASSRGNVEIVKFLLSHDAMPNLGYLVWESPLVCAIKSHSFECMDALLKVHRNHASYFIGFSPLSYAAKEGNARFLKSLLDAGAD...
XP_057801053.1
MKTQSINKMEVSHIFYNSNPMAMDSTSEIGALIIEAAATGDLPTLWKIKKKVDDDQQFRRICDEYSDFSTGRNVLHHAAEVGHFDICRFLIKIVKVYINAWTYKRDTPLIEAAKGEHVKLVEYLIKQGASISSGNSKGYTALHYAVLKDNRELMKLLVIKGARIDADSMEGTPLQIASSRGNVEIVKFLLSHDAMPNLGYLVWESPLVCAIKSHSFECMDALLKVHRNHASYFIGFSPLSYAAKEGNARFLKSLLDAGAD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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