Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.

Resolved gene

`SmilChr03G003257`

Chromosome: Chr03 Coordinates: 50466126-50470681 Strand: + Biotype: protein_coding

Basic Information

Standard Gene ID	`SmilChr03G003257`
Name	SmilChr03G003257
Description	probable myosin-binding protein 4
Chromosome / SeqID	Chr03 / NC_080389.1
Coordinates and Strand	50466126 - 50470681 / `+`

ID Mapping

NCBI Gene ID	`LOC131014160`
GeneID	`131014160`
locus_tag	`-`
NCBI Name	`LOC131014160`
Original query	`SmilChr03G003257`

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Functional Annotation

Source	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
Description	probable myosin-binding protein 4
Product	probable myosin-binding protein 4
Arabidopsis	`AT2G30690` (AT2G30690) lateral signaling target-like protein (Protein of unknown function, DUF593) [Source:NCBI gene (formerly Entrezgene);Acc:817619] identity=38.6; qcov=0.369; evalue=5.08e-41; confidence=low
Rice	`Os03g0708700` - identity=60.8; qcov=0.143; evalue=9.72e-28; confidence=weak
GO	GO:0017022 (myosin binding)
KEGG	-
Pfam	PF04576 (Zein-binding)
InterPro	-
eggNOG	-
NR	GeneID:131014160

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Subcellular Localization Top 5

Rank	Location	Chinese	Score	Protein ID
1	Nucleus	细胞核	0.40000	`XP_057798027.1`
2	Nucleus membrane	核膜	0.20000	`XP_057798027.1`
3	Cytoplasm	细胞质	0.20000	`XP_057798027.1`
4	Cell membrane	细胞膜	0.20000	`XP_057798027.1`
5	Chromosome	染色体	0.00000	`XP_057798027.1`

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EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position	REF	ALT	Type	Effect	Carriers	Samples
`Chr3:50467038`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr3:50467723`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D1
`Chr3:50467724`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B3,B76,B8,C77,C87
`Chr3:50467984`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B102
`Chr3:50468016`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B139

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Predicted Protein Domains

Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.

XP_057798027.1

680 aa

340

680

Zein-binding

PF04576 Zein-binding 517-607 aa

Protein ID	Source	Domain ID	Domain name	Type	Start aa	End aa	E-value	Score	Description
`XP_057798027.1`	Pfam	`PF04576`	Zein-binding	Coiled-coil	517	607	4.1e-30	104.6	Zein-binding

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

3 records

Download cDNA FASTA

XR_009098091.1
CGGTCAATGGAATTTGGAGGAGGACCCCATTGTAATTTTCCACCATAATGATGATCTCACAATTTCTTTTTCATGGCTGGTGAAATGGCGATCATGATTCATAATCATCTGCGTACCTTCTTTCTCCTGCTTTTCTCTCTGCCTTCCATCCGGTAATGGTAGGGAGAAAAGCGTTCGTTGTAGGATTCGATTAGTTGCGAGTTTTTGGTGATCCTGGAGGTCATATTGTTGCCATGGCTGCTGGAATTTCGTTTTCGAGG...

XR_009098090.1
GCGTACCTTCTTTCTCCTGCTTTTCTCTCTGCCTTCCATCCGGTAACTTTTCTTCCTTCTCCGCATTTCTCATTTTTTTTCTTTCCTGAATAAAGAGTTGATCGTTTAGAGATTGATTACAGGTAATGGTAGGGAGAAAAGCGTTCGTTGTAGGATTCGATTAGTTGCGAGTTTTTGGTGATCCTGGAGGTCATATTGTTGCCATGGCTGCTGGAATTTCGTTTTCGAGGAAGAGGAAGATCAATGGATTTATGAGTGTC...

CDS

1 records

Download CDS FASTA

LOC131014160
ATGGCTGCTGGAATTTCGTTTTCGAGGAAGAGGAAGATCAATGGATTTATGAGTGTCTTGTCATCCGCTGCATGTGAATGGTTCTTGATGTTCTTGCTATTTGTCGATGCAGCATTTTGGTATCTGCTCCTAAAATTTGCTCGCTATTGTGAACTGGAAACACCTTGTCTGTTATGCTCGAGGCTTGATCATGGTTTGGGAAAAAAGAAACCTGCATTATGTTGGAGCTTATTGTGCAGTGAGCACAGAGAAGAGATATC...

Protein

1 records

Download Protein FASTA

XP_057798027.1
MAAGISFSRKRKINGFMSVLSSAACEWFLMFLLFVDAAFWYLLLKFARYCELETPCLLCSRLDHGLGKKKPALCWSLLCSEHREEISSLVSCSVHCRFADVHSMCEECLTSSAMQKKSSSSENMICSCCSIAVRAKSNAERLVELDPLGFGVSRGNVRLPLPRTPSSSHFSRRDSLKRLRDKFAGTMANQPARGNSVGADTMSTVAYTKLKLSSDSESEFAHSEDDDDVNTDSGVNNFGTLEHDIEQSMHEPPSDSSALK...

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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