当前解析结果
SmilChr03G003258| 统一新 Gene ID | SmilChr03G003258 |
|---|---|
| 名称 | SmilChr03G003258 |
| 描述 | cytochrome P450 94A2-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 50488142 - 50490031 / + |
| NCBI Gene ID | LOC131014161 |
|---|---|
| GeneID | 131014161 |
| locus_tag | - |
| NCBI Name | LOC131014161 |
| 原始查询 | SmilChr03G003258 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cytochrome P450 94A2-like |
| 产物 | cytochrome P450 94A2-like |
| Arabidopsis | AT3G56630 (CYP94D2)cytochrome P450, family 94, subfamily D, polypeptide 2 [Source:NCBI gene (formerly Entrezgene);Acc:824830] identity=45.8; qcov=0.956; evalue=8.49e-147; confidence=high |
| Rice | Os03g0223100- identity=46.6; qcov=0.97; evalue=3.81e-148; confidence=high |
| GO | GO:0004497 (monooxygenase activity); GO:0005506 (iron ion binding); GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen); GO:0020037 (heme binding) |
| KEGG | smil00073 (Cutin, suberine and wax biosynthesis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00067 (p450) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014161 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057798029.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057798029.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057798029.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057798029.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057798029.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:50488323 |
TG |
T |
1bp_deletion | frameshift_variant | 2 | B40,B77 |
Chr3:50488323 |
TG |
T |
1bp_deletion | CDS_variant | 2 | B40,B77 |
Chr3:50488434 |
CG |
C |
1bp_deletion | frameshift_variant | 1 | B112 |
Chr3:50488434 |
CG |
C |
1bp_deletion | CDS_variant | 1 | B112 |
Chr3:50488436 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B112 |
Chr3:50488540 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr3:50488630 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C57 |
Chr3:50488811 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,C52 |
Chr3:50489080 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr3:50489179 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B76 |
Chr3:50489461 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C28 |
Chr3:50489540 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057798029.1PF00067
p450 77-476 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798029.1 |
Pfam | PF00067 |
p450 | Domain | 77 | 476 | 1.1e-65 | 223.0 | Cytochrome P450 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。