Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003262`

染色体: Chr03 坐标: 50541750-50544835 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003262`
名称	SmilChr03G003262
描述	transcription factor MTB3-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	50541750 - 50544835 / `+`

ID 对照

NCBI Gene ID	`LOC131014166`
GeneID	`131014166`
locus_tag	`-`
NCBI Name	`LOC131014166`
原始查询	`SmilChr03G003262`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcription factor MTB3-like
产物	transcription factor MTB3-like
Arabidopsis	`AT4G16430` (AT4G16430) basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:827337] identity=46.4; qcov=1.01; evalue=1.18e-146; confidence=high
Rice	`Os01g0235700` (OsbHLH008) - identity=51.6; qcov=0.318; evalue=2.41e-40; confidence=low
GO	GO:0000976 (transcription cis-regulatory region binding); GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription); GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF00010 (HLH); PF14215 (bHLH-MYC_N); PF23177 (bHLH_IRO3)
InterPro	-
eggNOG	-
NR	GeneID:131014166

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057798034.1`
2	Cytoplasm	细胞质	0.20000	`XP_057798034.1`
3	Cytosol	细胞质基质	0.20000	`XP_057798034.1`
4	Chromosome	染色体	0.00000	`XP_057798034.1`
5	Centromere	着丝粒	0.00000	`XP_057798034.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:50543295`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B95,C22,C43,C70
`Chr3:50544391`	`GAA`	`G`	2bp_deletion	frameshift_variant	3	B21,C28,C74
`Chr3:50544391`	`GAA`	`G`	2bp_deletion	CDS_variant	3	B21,C28,C74
`Chr3:50544483`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798034.1

500 aa

250

500

bHLH-MYC_N

HLH

bHLH_IRO3

PF14215 bHLH-MYC_N 49-228 aa PF00010 HLH 355-401 aa PF23177 bHLH_IRO3 358-409 aa

XP_057798035.1

500 aa

250

500

bHLH-MYC_N

HLH

bHLH_IRO3

PF14215 bHLH-MYC_N 49-228 aa PF00010 HLH 355-401 aa PF23177 bHLH_IRO3 358-409 aa

XP_057798036.1

500 aa

250

500

bHLH-MYC_N

HLH

bHLH_IRO3

PF14215 bHLH-MYC_N 49-228 aa PF00010 HLH 355-401 aa PF23177 bHLH_IRO3 358-409 aa

XP_057798037.1

500 aa

250

500

bHLH-MYC_N

HLH

bHLH_IRO3

PF14215 bHLH-MYC_N 49-228 aa PF00010 HLH 355-401 aa PF23177 bHLH_IRO3 358-409 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798034.1`	Pfam	`PF14215`	bHLH-MYC_N	Family	49	228	1.5e-39	136.8	bHLH-MYC and R2R3-MYB transcription factors N-terminal
`XP_057798034.1`	Pfam	`PF00010`	HLH	Domain	355	401	2.4e-11	44.0	Helix-loop-helix DNA-binding domain
`XP_057798034.1`	Pfam	`PF23177`	bHLH_IRO3	Domain	358	409	9.5e-08	33.0	Iron-related transcription factor 3 bHLH domain
`XP_057798035.1`	Pfam	`PF14215`	bHLH-MYC_N	Family	49	228	1.5e-39	136.8	bHLH-MYC and R2R3-MYB transcription factors N-terminal
`XP_057798035.1`	Pfam	`PF00010`	HLH	Domain	355	401	2.4e-11	44.0	Helix-loop-helix DNA-binding domain
`XP_057798035.1`	Pfam	`PF23177`	bHLH_IRO3	Domain	358	409	9.5e-08	33.0	Iron-related transcription factor 3 bHLH domain
`XP_057798036.1`	Pfam	`PF14215`	bHLH-MYC_N	Family	49	228	1.5e-39	136.8	bHLH-MYC and R2R3-MYB transcription factors N-terminal
`XP_057798036.1`	Pfam	`PF00010`	HLH	Domain	355	401	2.4e-11	44.0	Helix-loop-helix DNA-binding domain
`XP_057798036.1`	Pfam	`PF23177`	bHLH_IRO3	Domain	358	409	9.5e-08	33.0	Iron-related transcription factor 3 bHLH domain
`XP_057798037.1`	Pfam	`PF14215`	bHLH-MYC_N	Family	49	228	1.5e-39	136.8	bHLH-MYC and R2R3-MYB transcription factors N-terminal
`XP_057798037.1`	Pfam	`PF00010`	HLH	Domain	355	401	2.4e-11	44.0	Helix-loop-helix DNA-binding domain
`XP_057798037.1`	Pfam	`PF23177`	bHLH_IRO3	Domain	358	409	9.5e-08	33.0	Iron-related transcription factor 3 bHLH domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057942052.1
ATTAATCATAATATTGTTCAATAGTCAAAACCTTTGTTTTGATTCGAACCCCACTTTTTACCTAGAGCTAGAATGCATTCCTTCTCTTCAGACTGAATCTGCCCAGTTAGGGTTTCCAGAAACTCACACCCCCCCCGAGTCAATCACATTTGTCTCGCAAAATTCCCAGCGCCAGCGTTTCTGCGAGAAAATCTCGCCTACAATCGTTCAACCCTTTCACCGTTAGTATTTGTTTCCCAATCTTTTCCAGTTTTATCTTT...

XM_057942051.1
TAATATTGTTCAATAGTCAAAACCTTTGTTTTGATTCGAACCCCACTTTTTACCTAGAGCTAGAATGCATTCCTTCTCTTCAGACTGAATCTGCCCAGTTAGGGTTTCCAGAAACTCACACCCCCCCCGAGTCAATCACATTTGTCTCGCAAAATTCCCAGCGCCAGCGTTTCTGCGAGAAAATCTCGCCTACAATCGTTCAACCCTTTCACCGTTAGTATTTGTTTCCCAATCTTTTCCAGTTTTATCTTTCGATTCCC...

CDS

4 records

下载 CDS FASTA

LOC131014166
ATGGGAAAGAAAGTATGGTGGAATGAAGAAGAGAAGGTTGTTGTGGAAAGTGTGTTGGGCAGTGAAGCAACTGAATATTTTGACTGGGCCGCTTCAAATAATGTGTTGTCTGAGTTCTCTGCTTCTAGTGGGGATCTTGGAGTACAGGAGGCACTGTGCAAGATTGTTGAAGGATCTGATTTGACATATGCCATATATTGGCATGTTTCGAAATCAAAATCTGGTAGATCAGCATTGATATGGGGTGATGGGCATTATCA...

Protein

4 records

下载 Protein FASTA

XP_057798034.1
MGKKVWWNEEEKVVVESVLGSEATEYFDWAASNNVLSEFSASSGDLGVQEALCKIVEGSDLTYAIYWHVSKSKSGRSALIWGDGHYQESKESVHDSCGSYNDQKRVEGDRRKWVLQKLHACFGGLEDDNVAAKLDQVSNVEMLYLTSMFFVFPFDKPSIPSQSFNSDRCIWVSNLDSCLERYHSRAYLAKLAQFETVAFVPTKSGVVEIGSRKSIPENKSIIKAAKSIVVAFNSTQVKAVPKIFGQDLSMGGSRSGTINI...

XP_057798035.1
MGKKVWWNEEEKVVVESVLGSEATEYFDWAASNNVLSEFSASSGDLGVQEALCKIVEGSDLTYAIYWHVSKSKSGRSALIWGDGHYQESKESVHDSCGSYNDQKRVEGDRRKWVLQKLHACFGGLEDDNVAAKLDQVSNVEMLYLTSMFFVFPFDKPSIPSQSFNSDRCIWVSNLDSCLERYHSRAYLAKLAQFETVAFVPTKSGVVEIGSRKSIPENKSIIKAAKSIVVAFNSTQVKAVPKIFGQDLSMGGSRSGTINI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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