Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003270`

染色体: Chr03 坐标: 50645629-50646761 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003270`
名称	SmilChr03G003270
描述	transcription factor MYB30-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	50645629 - 50646761 / `-`

ID 对照

NCBI Gene ID	`LOC131014174`
GeneID	`131014174`
locus_tag	`-`
NCBI Name	`LOC131014174`
原始查询	`SmilChr03G003270`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcription factor MYB30-like
产物	transcription factor MYB30-like
Arabidopsis	`AT2G31180` (MYB14) myb domain protein 14 [Source:NCBI gene (formerly Entrezgene);Acc:817674] identity=47.4; qcov=1.26; evalue=1.68e-68; confidence=high
Rice	`Os04g0517100` (OsMyb4) - identity=45.4; qcov=1.3; evalue=2.97e-65; confidence=high
GO	-
KEGG	-
Pfam	PF00249 (Myb_DNA-binding); PF13921 (Myb_DNA-bind_6)
InterPro	-
eggNOG	-
NR	GeneID:131014174

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057798048.1`
2	Chromosome	染色体	0.00000	`XP_057798048.1`
3	Centromere	着丝粒	0.00000	`XP_057798048.1`
4	Chromatin	染色质	0.00000	`XP_057798048.1`
5	Telomere	端粒	0.00000	`XP_057798048.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:50645838`	`GC`	`G`	1bp_deletion	frameshift_variant	1	C47
`Chr3:50645838`	`GC`	`G`	1bp_deletion	CDS_variant	1	C47
`Chr3:50646483`	`C`	`T`	EMS_canonical_SNV	stop_gained	5	B38,B39,B5,C65,C79
`Chr3:50646483`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B38,B39,B5,C65,C79
`Chr3:50646501`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798048.1

206 aa

103

206

Myb_DNA-binding

Myb_DNA-bind_6

Myb_DNA-binding

Myb_DNA-bind_6

PF00249 Myb_DNA-binding 14-61 aa PF13921 Myb_DNA-bind_6 17-75 aa PF00249 Myb_DNA-binding 67-112 aa PF13921 Myb_DNA-bind_6 70-115 aa

XP_057798049.1

199 aa

100

199

Myb_DNA-binding

Myb_DNA-bind_6

Myb_DNA-binding

PF00249 Myb_DNA-binding 14-61 aa PF13921 Myb_DNA-bind_6 17-75 aa PF00249 Myb_DNA-binding 67-105 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798048.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	14	61	2.5e-34	117.8	Myb-like DNA-binding domain
`XP_057798048.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	17	75	1.1e-18	67.9	Myb-like DNA-binding domain
`XP_057798048.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	67	112	2.5e-34	117.8	Myb-like DNA-binding domain
`XP_057798048.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	70	115	1.1e-18	67.9	Myb-like DNA-binding domain
`XP_057798049.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	14	61	6.1e-26	91.0	Myb-like DNA-binding domain
`XP_057798049.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	17	75	2.5e-12	47.5	Myb-like DNA-binding domain
`XP_057798049.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	67	105	6.1e-26	91.0	Myb-like DNA-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057942065.1
TTCAAATCCCCTATATGTCATATATATAGGGGGCATAGCCACTGCCAACCTTGAACCATTTATTCAAGAATTCACAAACCCTCCCAATACACAAGTGAGAATTAACTCTTTTTCTCGAAAAAACTAAAGAAAAGAAGAAGAAGAAGAAGAAGGTGGGATTAAGTAGTGATGGGGCGGGCTCCTTGCTGTGAGAAAATGGGGTTGAAGAAGGGCCCGTGGACTGCAGAAGAAGATCTCATCCTCATCAATTTCATCAACCA...

XM_057942066.1
GCATAGCCACTGCCAACCTTGAACCATTTATTCAAGAATTCACAAACCCTCCCAATACACAAGTGAGAATTAACTCTTTTTCTCGAAAAAACTAAAGAAAAGAAGAAGAAGAAGAAGAAGGTGGGATTAAGTAGTGATGGGGCGGGCTCCTTGCTGTGAGAAAATGGGGTTGAAGAAGGGCCCGTGGACTGCAGAAGAAGATCTCATCCTCATCAATTTCATCAACCACAACGGCCATGGCAACTGGCGGGCCCTTCCCA...

CDS

2 records

下载 CDS FASTA

LOC131014174
ATGGGGCGGGCTCCTTGCTGTGAGAAAATGGGGTTGAAGAAGGGCCCGTGGACTGCAGAAGAAGATCTCATCCTCATCAATTTCATCAACCACAACGGCCATGGCAACTGGCGGGCCCTTCCCAAACGGGCCGGGCTTTTGAGGTGTGGAAAGAGCTGCCGCCTGCGTTGGATGAATTACTTGCGGCCCGATATTAAGAGAGGAAATTTCAGTCGCGAAGAGGAGGCCATCATCATCAATTTGCATCAAGAATTGGGAAA...

Protein

2 records

下载 Protein FASTA

XP_057798048.1
MGRAPCCEKMGLKKGPWTAEEDLILINFINHNGHGNWRALPKRAGLLRCGKSCRLRWMNYLRPDIKRGNFSREEEAIIINLHQELGNRWSVIASRLPGRTDNEIKNIWHTHLKKRLCKRSRAEPEARNESTSDEDATNSPMHSFSEVSSENPPEMDDSFWSEVLSGDDFVTDSPLRLSESVNEDGGMDFWYNLFNRADDILDLPDF

XP_057798049.1
MGRAPCCEKMGLKKGPWTAEEDLILINFINHNGHGNWRALPKRAGLLRCGKSCRLRWMNYLRPDIKRGNFSREEEAIIINLHQELGNRLPGRTDNEIKNIWHTHLKKRLCKRSRAEPEARNESTSDEDATNSPMHSFSEVSSENPPEMDDSFWSEVLSGDDFVTDSPLRLSESVNEDGGMDFWYNLFNRADDILDLPDF

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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