当前解析结果
SmilChr03G003286| 统一新 Gene ID | SmilChr03G003286 |
|---|---|
| 名称 | SmilChr03G003286 |
| 描述 | uncharacterized SmilChr03G003286 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 50934820 - 50935836 / + |
| NCBI Gene ID | LOC131018950 |
|---|---|
| GeneID | 131018950 |
| locus_tag | - |
| NCBI Name | LOC131018950 |
| 原始查询 | SmilChr03G003286 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os12g0292200; species=rice; confidence=weak |
| 产物 | hit=Os12g0292200; species=rice; confidence=weak |
| Arabidopsis | -- |
| Rice | Os12g0292200- identity=37; qcov=0.191; evalue=2.5e-07; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018950 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057803616.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057803616.1 |
| 3 | Cytoplasmic granule | 细胞质颗粒 | 0.60000 | XP_057803616.1 |
| 4 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 0.60000 | XP_057803616.1 |
| 5 | Cytosol | 细胞质基质 | 0.20000 | XP_057803616.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:50934822 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr3:50934825 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr3:50934889 |
C |
T |
EMS_canonical_SNV | stop_gained | 3 | A1,B105,B108 |
Chr3:50934889 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A1,B105,B108 |
Chr3:50934896 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A4,B99,C16,C5 |
Chr3:50934901 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C5 |
Chr3:50934922 |
C |
T |
EMS_canonical_SNV | stop_gained | 45 | A15,A18,A22,A23,A24,A5,A6,A7,B107,B11,B110,B121,B15,B24,B28,B32,B40,B41,B53,B54,B60,B62,B68,B8,B80,B87,B93,C1,C10,C16,C18,C19,C25,C34,C42,C5,C60,C62,C63,C67,C68,C74,C78,C87,D3 |
Chr3:50934934 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B32,B63,B71,C66,C76 |
Chr3:50934935 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C77,C87 |
Chr3:50934963 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D2 |
Chr3:50934979 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B107,C44 |
Chr3:50934985 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B34 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。