当前解析结果
SmilChr03G003291| 统一新 Gene ID | SmilChr03G003291 |
|---|---|
| 名称 | SmilChr03G003291 |
| 描述 | uncharacterized SmilChr03G003291 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 51027435 - 51028476 / - |
| NCBI Gene ID | LOC131014189 |
|---|---|
| GeneID | 131014189 |
| locus_tag | - |
| NCBI Name | LOC131014189 |
| 原始查询 | SmilChr03G003291 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ral transcription factor 2-related zinc finger protein [Source:NCBI gene (formerly Entrezgene);Acc:822666]; symbol=AT3G29765; hit=AT3G29765; species=arabidopsis; confidence=high |
| 产物 | ral transcription factor 2-related zinc finger protein [Source:NCBI gene (formerly Entrezgene);Acc:822666]; symbol=AT3G29765; hit=AT3G29765; species=arabidopsis; confidence=high |
| Arabidopsis | AT3G29765 (AT3G29765)ral transcription factor 2-related zinc finger protein [Source:NCBI gene (formerly Entrezgene);Acc:822666] identity=51.9; qcov=0.984; evalue=1.46e-109; confidence=high |
| Rice | Os02g0301400- identity=40; qcov=0.379; evalue=1.99e-20; confidence=low |
| GO | GO:0046983 (protein dimerization activity) |
| KEGG | - |
| Pfam | PF05699 (Dimer_Tnp_hAT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014189 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057798064.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057798064.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057798064.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057798064.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057798064.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:51027674 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C38,C49 |
Chr3:51027752 |
G |
A |
EMS_canonical_SNV | stop_gained | 5 | C17,C4,C43,C54,C65 |
Chr3:51027752 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | C17,C4,C43,C54,C65 |
Chr3:51027764 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A15,B21,B26 |
Chr3:51027765 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B45,B54,C43,C72 |
Chr3:51027783 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B45,B54,C43,C72 |
Chr3:51027804 |
AT |
A |
1bp_deletion | frameshift_variant | 26 | A14,A7,B113,B122,B129,B136,B20,B27,B32,B35,B36,B53,B55,B66,B78,B79,B83,B99,C13,C14,C28,C5,C80,C84,C85,D9 |
Chr3:51027819 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A7,B122 |
Chr3:51028168 |
C |
T |
EMS_canonical_SNV | stop_gained | 6 | B119,B13,B131,B23,B65,C51 |
Chr3:51028195 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B36,B61,C33,C47 |
Chr3:51028363 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B8,C3 |
Chr3:51028373 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B100,C36,C7,C73 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057798064.1PF05699
Dimer_Tnp_hAT 234-293 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798064.1 |
Pfam | PF05699 |
Dimer_Tnp_hAT | Domain | 234 | 293 | 1.8e-07 | 31.5 | hAT family C-terminal dimerisation region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。