Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003336`

染色体: Chr03 坐标: 51624445-51627136 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003336`
名称	SmilChr03G003336
描述	uncharacterized SmilChr03G003336
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	51624445 - 51627136 / `-`

ID 对照

NCBI Gene ID	`LOC131014230`
GeneID	`131014230`
locus_tag	`-`
NCBI Name	`LOC131014230`
原始查询	`SmilChr03G003336`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Frigida-like protein [Source:NCBI gene (formerly Entrezgene);Acc:832780]; symbol=AT5G27220; hit=AT5G27220; species=arabidopsis; confidence=low
产物	Frigida-like protein [Source:NCBI gene (formerly Entrezgene);Acc:832780]; symbol=AT5G27220; hit=AT5G27220; species=arabidopsis; confidence=low
Arabidopsis	`AT5G27220` (AT5G27220) Frigida-like protein [Source:NCBI gene (formerly Entrezgene);Acc:832780] identity=33.3; qcov=0.468; evalue=5.76e-22; confidence=low
Rice	`Os07g0592300` (OJ1710_H11.106) - identity=31.6; qcov=0.247; evalue=5.37e-14; confidence=weak
GO	-
KEGG	-
Pfam	PF07899 (Frigida)
InterPro	-
eggNOG	-
NR	GeneID:131014230

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057798103.1`
2	Cytoplasm	细胞质	0.60000	`XP_057798103.1`
3	Cytosol	细胞质基质	0.40000	`XP_057798103.1`
4	Chromosome	染色体	0.00000	`XP_057798103.1`
5	Centromere	着丝粒	0.00000	`XP_057798103.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:51624701`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A21,B51,B66,C9
`Chr3:51624940`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B97
`Chr3:51624955`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr3:51625253`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C44,C83
`Chr3:51625458`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B46,C78,D2,D5
`Chr3:51625475`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B28
`Chr3:51625484`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C77
`Chr3:51625494`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A10,B48
`Chr3:51625843`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C46
`Chr3:51625844`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C72
`Chr3:51625847`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C44,C83
`Chr3:51626147`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	C45,C58,C85,D3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798103.1

710 aa

355

710

Frigida

PF07899 Frigida 560-706 aa

XP_057798104.1

693 aa

346

693

Frigida

PF07899 Frigida 543-689 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798103.1`	Pfam	`PF07899`	Frigida	Family	560	706	1.2e-35	124.0	Frigida-like protein
`XP_057798104.1`	Pfam	`PF07899`	Frigida	Family	543	689	1.2e-35	124.0	Frigida-like protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057942121.1
ATAAAATATTAAACAGAAATAAAAAAGTTGAAAGAGCTCTGGGAAACCCTGAAAGAGTTAGGTTTATTAGCATTCAGTACTGAGTAGGGATTCATCCTCTTCCCCAATTCCAAAGTGTAAAAGACAAAAGAACTTCTACCCCCAATACTCTGGAAGCTCTGAGCGAGCGGACTAGTGTAACTGAGAAAATGGTGGATTTTCTGCAAACAAAATGTTCAGAAATTGAGTCGAGGAAGCGGAAATTGGATGCAGCTTGGGGT...

XM_057942120.1
AAAGAGCTCTGGGAAACCCTGAAAGAGTTAGGTTTATTAGCATTCAGTACTGAGTAGGGATTCATCCTCTTCCCCAATTCCAAAGTGTAAAAGACAAAAGAACTTCTACCCCCAATGTAAGTAGTTACATATATTTTGTTAATTTTTTGTAACAATTTTACTGCTGCACTCCATTCTCCCCTTTCTCCTGAATGCCATCATCCCCACGTCCCAAATTTTCAATCCACACACACACCACCTATTTCCCGCGTATCTTGCGG...

CDS

2 records

下载 CDS FASTA

LOC131014230
ATGGAGAAGACTCTGGAAGCTCTGAGCGAGCGGACTAGTGTAACTGAGAAAATGGTGGATTTTCTGCAAACAAAATGTTCAGAAATTGAGTCGAGGAAGCGGAAATTGGATGCAGCTTGGGGTGAGGTCGATTTTCTGAGAGATTCGCTGGTCAAACGGGAGTGGGATTTGGAGGAGAAAGAGAGGAGATTCTTCTTGTTCGAAGAGAGGAGAAAGAGGGAACTCGCGTCTGAGAAAGAGGAACTGAGGTTGGAGCGTGT...

LOC131014230
ATGGTGGATTTTCTGCAAACAAAATGTTCAGAAATTGAGTCGAGGAAGCGGAAATTGGATGCAGCTTGGGGTGAGGTCGATTTTCTGAGAGATTCGCTGGTCAAACGGGAGTGGGATTTGGAGGAGAAAGAGAGGAGATTCTTCTTGTTCGAAGAGAGGAGAAAGAGGGAACTCGCGTCTGAGAAAGAGGAACTGAGGTTGGAGCGTGTTAGGTTATACGACGAAATTAGGATGGGAGAGGAGGAACTGAACCATCGTCT...

Protein

2 records

下载 Protein FASTA

XP_057798103.1
MEKTLEALSERTSVTEKMVDFLQTKCSEIESRKRKLDAAWGEVDFLRDSLVKREWDLEEKERRFFLFEERRKRELASEKEELRLERVRLYDEIRMGEEELNHRLAAVNERDDWLEMAEAEVREIRGRQREWSQKIEAEGESLNARISAVEEKELKFKLFQEGKMREIALKQESLDKKWKEFGEQARLADDKFRDQELLKHRFIERIEMAENKLDHVRLKMDKRFEEIECRDNAGWESLALSVKEADLIRESVEKKLEELE...

XP_057798104.1
MVDFLQTKCSEIESRKRKLDAAWGEVDFLRDSLVKREWDLEEKERRFFLFEERRKRELASEKEELRLERVRLYDEIRMGEEELNHRLAAVNERDDWLEMAEAEVREIRGRQREWSQKIEAEGESLNARISAVEEKELKFKLFQEGKMREIALKQESLDKKWKEFGEQARLADDKFRDQELLKHRFIERIEMAENKLDHVRLKMDKRFEEIECRDNAGWESLALSVKEADLIRESVEKKLEELEKMQTEFITFQEEKSREL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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