Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003337`

染色体: Chr03 坐标: 51633739-51639024 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003337`
名称	SmilChr03G003337
描述	U-box domain-containing protein 3
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	51633739 - 51639024 / `+`

ID 对照

NCBI Gene ID	`LOC131014231`
GeneID	`131014231`
locus_tag	`-`
NCBI Name	`LOC131014231`
原始查询	`SmilChr03G003337`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	U-box domain-containing protein 3
产物	U-box domain-containing protein 3
Arabidopsis	`AT2G23140` (PUB4) RING/U-box superfamily protein with ARM repeat domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:816846] identity=42.1; qcov=1.07; evalue=0; confidence=medium
Rice	`Os01g0884400` (OsPUB16) - identity=41.2; qcov=1.06; evalue=1.45e-171; confidence=medium
GO	GO:0004842 (ubiquitin-protein transferase activity); GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0016567 (protein ubiquitination)
KEGG	-
Pfam	PF00514 (Arm); PF04564 (U-box); PF25240 (PUB2_N); PF25598 (ARM_PUB)
InterPro	-
eggNOG	-
NR	GeneID:131014231

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057798105.1`
2	Cell membrane	细胞膜	0.80000	`XP_057798105.1`
3	Cytoplasm	细胞质	0.60000	`XP_057798105.1`
4	Nucleus	细胞核	0.00000	`XP_057798105.1`
5	Chromosome	染色体	0.00000	`XP_057798105.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:51635932`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:51636116`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:51636532`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B47,C44,C83
`Chr3:51636577`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B102,B26,C40,C86
`Chr3:51637343`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C46,C72
`Chr3:51637515`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B110,B125,B138
`Chr3:51637637`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B108,C23
`Chr3:51637644`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C43,D10
`Chr3:51637937`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B68
`Chr3:51638244`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C83
`Chr3:51638281`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B12,B122,C32,C42,C68
`Chr3:51638484`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798105.1

771 aa

386

771

PUB2_N

U-box

ARM_PUB

Arm

PF25240 PUB2_N 4-140 aa PF04564 U-box 236-307 aa PF25598 ARM_PUB 486-762 aa PF00514 Arm 517-554 aa PF00514 Arm 599-636 aa PF00514 Arm 640-676 aa

XP_057798106.1

771 aa

386

771

PUB2_N

U-box

ARM_PUB

Arm

PF25240 PUB2_N 4-140 aa PF04564 U-box 236-307 aa PF25598 ARM_PUB 486-762 aa PF00514 Arm 517-554 aa PF00514 Arm 599-636 aa PF00514 Arm 640-676 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798105.1`	Pfam	`PF25240`	PUB2_N	Domain	4	140	3.2e-46	157.5	PUB2-like, N-terminal domain
`XP_057798105.1`	Pfam	`PF04564`	U-box	Domain	236	307	1.4e-21	77.1	U-box domain
`XP_057798105.1`	Pfam	`PF25598`	ARM_PUB	Repeat	486	762	1.9e-26	93.9	Plant U-box protein ARM repeat region
`XP_057798105.1`	Pfam	`PF00514`	Arm	Repeat	517	554	4.5e-36	122.4	Armadillo/beta-catenin-like repeat
`XP_057798105.1`	Pfam	`PF00514`	Arm	Repeat	599	636	4.5e-36	122.4	Armadillo/beta-catenin-like repeat
`XP_057798105.1`	Pfam	`PF00514`	Arm	Repeat	640	676	4.5e-36	122.4	Armadillo/beta-catenin-like repeat
`XP_057798106.1`	Pfam	`PF25240`	PUB2_N	Domain	4	140	3.2e-46	157.5	PUB2-like, N-terminal domain
`XP_057798106.1`	Pfam	`PF04564`	U-box	Domain	236	307	1.4e-21	77.1	U-box domain
`XP_057798106.1`	Pfam	`PF25598`	ARM_PUB	Repeat	486	762	1.9e-26	93.9	Plant U-box protein ARM repeat region
`XP_057798106.1`	Pfam	`PF00514`	Arm	Repeat	517	554	4.5e-36	122.4	Armadillo/beta-catenin-like repeat
`XP_057798106.1`	Pfam	`PF00514`	Arm	Repeat	599	636	4.5e-36	122.4	Armadillo/beta-catenin-like repeat
`XP_057798106.1`	Pfam	`PF00514`	Arm	Repeat	640	676	4.5e-36	122.4	Armadillo/beta-catenin-like repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057942123.1
AAAAAGGTTCAAACTTTTTTCATTTGCATCTAATCATGGTTTACAGATTCCTCCTCATTTCTTAATCCTTCTCCAAATTATTAAATAATGACAACCAATTCATAATTACCTCATTAATTTATTCTTCCCCACCACGTACAAATTTGCAGCTATAAATTGGGACCCACATATTCCTCCTCTCTCTTAATGTTTTCGGATCCCTTCAATATTTTTTCTCGATTTTTCCAGCTCCAGAATGAAGCACAGTGAAGAGGGGTGGC...

XM_057942122.1
AAAGGTTCAAACTTTTTTCATTTGCATCTAATCATGGTTTACAGATTCCTCCTCATTTCTTAATCCTTCTCCAAATTATTAAATAATGACAACCAATTCATAATTACCTCATTAATTTATTCTTCCCCACCACGTACAAATTTGCAGCTATAAATTGGGACCCACATATTCCTCCTCTCTCTTAATGTTTTCGGATCCCTTCAATATTTTTTCTCGATTTTTCCAGCTCCAGAATGAAGCACAGTGAAGAGGGGTGGCAA...

CDS

2 records

下载 CDS FASTA

LOC131014231
ATGGACTTGACACCATTAAGATGTCTTATTAACAGTATTTCTCGATTCATTCATCTGGTAACATGCCGTGTATCAAGTACGATGCCGGCTGAGAAGGATTACCAAACTTTGGTTTCTATGTTGAAGCATTTGAAACCAGTACTTGATGATGTTTCTGATCACAAAGCACCACTGGATGAAGCATTGTTTAAAGAATGTGAAGAGTTGGATATAGCTGTAAATGAGGCCAGAGAGTTCCTTGAGAAATGGTCCCCAAGAAC...

Protein

2 records

下载 Protein FASTA

XP_057798105.1
MDLTPLRCLINSISRFIHLVTCRVSSTMPAEKDYQTLVSMLKHLKPVLDDVSDHKAPLDEALFKECEELDIAVNEAREFLEKWSPRTSKLLFVLQSKPLLLSIQIASVKLSCILCKIFESLPTSSSLAHVQFSVQECQNLKLGQLAEQIEEILKSQKEGKVPGVQHLKHIIESFNLTSGEEILNEYIALEKEKQKAEGSDIKGDLDHISRTVDLLSHVRDYVVNLEKFKAINDIQIPSYFRCPLSLELMLDPVIVASGQT...

XP_057798106.1
MDLTPLRCLINSISRFIHLVTCRVSSTMPAEKDYQTLVSMLKHLKPVLDDVSDHKAPLDEALFKECEELDIAVNEAREFLEKWSPRTSKLLFVLQSKPLLLSIQIASVKLSCILCKIFESLPTSSSLAHVQFSVQECQNLKLGQLAEQIEEILKSQKEGKVPGVQHLKHIIESFNLTSGEEILNEYIALEKEKQKAEGSDIKGDLDHISRTVDLLSHVRDYVVNLEKFKAINDIQIPSYFRCPLSLELMLDPVIVASGQT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器