Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003342`

染色体: Chr03 坐标: 51754279-51757289 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003342`
名称	SmilChr03G003342
描述	pentatricopeptide repeat-containing protein At3g02330, mitochondrial
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	51754279 - 51757289 / `+`

ID 对照

NCBI Gene ID	`LOC131014235`
GeneID	`131014235`
locus_tag	`-`
NCBI Name	`LOC131014235`
原始查询	`SmilChr03G003342`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At3g02330, mitochondrial
产物	pentatricopeptide repeat-containing protein At3g02330%2C mitochondrial
Arabidopsis	`AT3G02330` (AT3G02330) Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821115] identity=59.6; qcov=0.987; evalue=0; confidence=high
Rice	`Os10g0558600` (PPR13) - identity=56.5; qcov=0.963; evalue=0; confidence=high
GO	GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0009451 (RNA modification)
KEGG	-
Pfam	PF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF20430 (Eplus_motif); PF20431 (E_motif)
InterPro	-
eggNOG	-
NR	GeneID:131014235

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057798111.1`
2	Nucleus	细胞核	0.00000	`XP_057798111.1`
3	Chromosome	染色体	0.00000	`XP_057798111.1`
4	Centromere	着丝粒	0.00000	`XP_057798111.1`
5	Chromatin	染色质	0.00000	`XP_057798111.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:51754475`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C44,C83
`Chr3:51754810`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr3:51755047`	`AAG`	`A`	2bp_deletion	frameshift_variant	3	B55,B78,C23
`Chr3:51755047`	`AAG`	`A`	2bp_deletion	CDS_variant	3	B55,B78,C23
`Chr3:51755096`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	C38,C44,C83,D6
`Chr3:51755180`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B24,C72
`Chr3:51755206`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:51755209`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B91
`Chr3:51755209`	`GC`	`G`	1bp_deletion	CDS_variant	1	B91
`Chr3:51755278`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B24,C72
`Chr3:51755302`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	D10,D11
`Chr3:51755347`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B104,B69,D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798111.1

861 aa

430

861

PPR

PPR_2

PPR

PPR_2

PPR

PPR_3

PPR_2

PPR

PPR_long

PPR

E_motif

Eplus_motif

PF01535 PPR 77-102 aa PF01535 PPR 105-134 aa PF01535 PPR 136-163 aa PF01535 PPR 209-233 aa PF01535 PPR 237-267 aa PF01535 PPR 310-331 aa PF01535 PPR 339-367 aa PF01535 PPR 411-436 aa PF13041 PPR_2 437-483 aa PF01535 PPR 511-536 aa PF13041 PPR_2 538-584 aa PF01535 PPR 539-569 aa PF01535 PPR 611-633 aa PF13812 PPR_3 638-684 aa PF13041 PPR_2 638-686 aa PF01535 PPR 640-667 aa PF17177 PPR_long 656-737 aa PF01535 PPR 676-703 aa PF01535 PPR 712-737 aa PF20431 E_motif 757-817 aa PF20430 Eplus_motif 822-849 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798111.1`	Pfam	`PF01535`	PPR	Repeat	77	102	7.2e-81	261.7	PPR repeat
`XP_057798111.1`	Pfam	`PF01535`	PPR	Repeat	105	134	7.2e-81	261.7	PPR repeat
`XP_057798111.1`	Pfam	`PF01535`	PPR	Repeat	136	163	7.2e-81	261.7	PPR repeat
`XP_057798111.1`	Pfam	`PF01535`	PPR	Repeat	209	233	7.2e-81	261.7	PPR repeat
`XP_057798111.1`	Pfam	`PF01535`	PPR	Repeat	237	267	7.2e-81	261.7	PPR repeat
`XP_057798111.1`	Pfam	`PF01535`	PPR	Repeat	310	331	7.2e-81	261.7	PPR repeat
`XP_057798111.1`	Pfam	`PF01535`	PPR	Repeat	339	367	7.2e-81	261.7	PPR repeat
`XP_057798111.1`	Pfam	`PF01535`	PPR	Repeat	411	436	7.2e-81	261.7	PPR repeat
`XP_057798111.1`	Pfam	`PF13041`	PPR_2	Repeat	437	483	1.3e-85	282.0	PPR repeat family
`XP_057798111.1`	Pfam	`PF01535`	PPR	Repeat	511	536	7.2e-81	261.7	PPR repeat
`XP_057798111.1`	Pfam	`PF13041`	PPR_2	Repeat	538	584	1.3e-85	282.0	PPR repeat family
`XP_057798111.1`	Pfam	`PF01535`	PPR	Repeat	539	569	7.2e-81	261.7	PPR repeat
`XP_057798111.1`	Pfam	`PF01535`	PPR	Repeat	611	633	7.2e-81	261.7	PPR repeat
`XP_057798111.1`	Pfam	`PF13812`	PPR_3	Repeat	638	684	2.2e-26	92.4	Pentatricopeptide repeat domain
`XP_057798111.1`	Pfam	`PF13041`	PPR_2	Repeat	638	686	1.3e-85	282.0	PPR repeat family
`XP_057798111.1`	Pfam	`PF01535`	PPR	Repeat	640	667	7.2e-81	261.7	PPR repeat
`XP_057798111.1`	Pfam	`PF17177`	PPR_long	Repeat	656	737	1.4e-17	64.5	Pentacotripeptide-repeat region of PRORP
`XP_057798111.1`	Pfam	`PF01535`	PPR	Repeat	676	703	7.2e-81	261.7	PPR repeat
`XP_057798111.1`	Pfam	`PF01535`	PPR	Repeat	712	737	7.2e-81	261.7	PPR repeat
`XP_057798111.1`	Pfam	`PF20431`	E_motif	Repeat	757	817	1.3e-23	83.8	E motif
`XP_057798111.1`	Pfam	`PF20430`	Eplus_motif	Motif	822	849	2.4e-07	31.1	E+ motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057942128.1
GAAAAAAAAAAAAAAGAATTCATATGTCATTTTTTCAAAATCCGCATAATCTTTTAATTAAAAAAATATTTAATTAAATTATGTTTGAGAAAAGCATGAATTGATTTGAATTCGGAATCCGATGGGCTCTCGTTTCTGAAGGAGGATGTTTGATTACCAGCTAAAGCTGAGATTACAGAACCTTCTTCTAAAATGTCCAGTCAAAATATGTTGGTTCTCTACGTTTATAGCAGAGAAGCAATCACATCCGTTTTACCTAA...

CDS

1 records

下载 CDS FASTA

LOC131014235
ATGTTTGATTACCAGCTAAAGCTGAGATTACAGAACCTTCTTCTAAAATGTCCAGTCAAAATATGTTGGTTCTCTACGTTTATAGCAGAGAAGCAATCACATCCGTTTTACCTAAAGACATTTTCCCATATATTTCAAGAATGCTCCAAGGCCAGAGCGCGCGAAGCAGGCAAGCAAGCCCACGCAAGGATGATCGTATCTGGGTTCAAACCCTCAGTATTTGTTGCCAATTGTTTGCTTCAGATGTACATTAAATGCTC...

Protein

1 records

下载 Protein FASTA

XP_057798111.1
MFDYQLKLRLQNLLLKCPVKICWFSTFIAEKQSHPFYLKTFSHIFQECSKARAREAGKQAHARMIVSGFKPSVFVANCLLQMYIKCSRMECAGKVFDRMPERDRISWNAMIFGYSVNGNMGLAQSFFDFMPERDVISWNSLVSGYLQNGNCLKSVEVFVMMGRDAVACDETTFAVVLKSCASLEDYVLGLQVHGVVVKLGFECDVVTGSALLDMYAKCKMLDESLLFFDAMPVRNWVSWSAIIGGSVQNGELEGGLELFK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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