Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003351`

染色体: Chr03 坐标: 51845575-51854471 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003351`
名称	SmilChr03G003351
描述	casein kinase 1-like protein 9
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	51845575 - 51854471 / `+`

ID 对照

NCBI Gene ID	`LOC131014246`
GeneID	`131014246`
locus_tag	`-`
NCBI Name	`LOC131014246`
原始查询	`SmilChr03G003351`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	casein kinase 1-like protein 9
产物	casein kinase 1-like protein 9
Arabidopsis	`AT4G14340` (CKI1) casein kinase I [Source:NCBI gene (formerly Entrezgene);Acc:827076] identity=74.1; qcov=1; evalue=0; confidence=high
Rice	`Os02g0622100` (HBD2) - identity=72.8; qcov=1.02; evalue=0; confidence=high
GO	GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0006897 (endocytosis); GO:0007165 (signal transduction); GO:0018105 (peptidyl-serine phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF17667 (Pkinase_fungal)
InterPro	-
eggNOG	-
NR	GeneID:131014246

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057798137.1`
2	Nucleus	细胞核	1.00000	`XP_057798138.1`
3	Cytosol	细胞质基质	1.00000	`XP_057798137.1`
4	Nucleoplasm	核质	0.80000	`XP_057798138.1`
5	Nuclear body	核内小体	0.40000	`XP_057798138.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:51847829`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C44
`Chr3:51847888`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B72
`Chr3:51849830`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B10,B15,B66,C22
`Chr3:51850195`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B10,B15,B66,C22
`Chr3:51854106`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	C54
`Chr3:51854106`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C54

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798137.1

456 aa

228

456

Pkinase

PK_Tyr_Ser-Thr

Pkinase_fungal

PF00069 Pkinase 10-227 aa PF07714 PK_Tyr_Ser-Thr 10-268 aa PF17667 Pkinase_fungal 117-206 aa

XP_057798138.1

455 aa

228

455

Pkinase

PK_Tyr_Ser-Thr

Pkinase_fungal

PF00069 Pkinase 10-227 aa PF07714 PK_Tyr_Ser-Thr 10-268 aa PF17667 Pkinase_fungal 117-206 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798137.1`	Pfam	`PF00069`	Pkinase	Domain	10	227	2.5e-26	93.4	Protein kinase domain
`XP_057798137.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	10	268	5.7e-15	56.0	Protein tyrosine and serine/threonine kinase
`XP_057798137.1`	Pfam	`PF17667`	Pkinase_fungal	Domain	117	206	3.3e-09	36.7	Fungal protein kinase
`XP_057798138.1`	Pfam	`PF00069`	Pkinase	Domain	10	227	2.5e-26	93.4	Protein kinase domain
`XP_057798138.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	10	268	5.7e-15	56.0	Protein tyrosine and serine/threonine kinase
`XP_057798138.1`	Pfam	`PF17667`	Pkinase_fungal	Domain	117	206	3.3e-09	36.7	Fungal protein kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057942154.1
TCTCTTTTCGAACACCCACCACTCACCCCAATAATCAATCATCAATCTTTTCCAGACACTCTCTCTCTCCTCATTTCGCCTTTCCTCTCTCACACACACAGCACACACACGCACGAAATCCATTGTTTTGCTCTCCCAAAACTATTTGCCCCGCGCCCCTCCCTTTTGTCCTCCCCTCTTTCCTCAATTCTCGCTCATCTGTCTCCTCTTTGTATTGTTCGTTATCATCATTATTATCATAGTTTTTAGATTCGTTCATT...

XM_057942155.1
ACTCACCCCAATAATCAATCATCAATCTTTTCCAGACACTCTCTCTCTCCTCATTTCGCCTTTCCTCTCTCACACACACAGCACACACACGCACGAAATCCATTGTTTTGCTCTCCCAAAACTATTTGCCCCGCGCCCCTCCCTTTTGTCCTCCCCTCTTTCCTCAATTCTCGCTCATCTGTCTCCTCTTTGTATTGTTCGTTATCATCATTATTATCATAGTTTTTAGATTCGTTCATTCGCTATAATAATCACCCTAA...

CDS

2 records

下载 CDS FASTA

LOC131014246
ATGGATCATGTCGTGGGTGGAAAATTTAAGCTTGGGAGGAAAATTGGGTGTGGTTCATTTGGTGAACTCTTTTTAGGCGTCAACATACAGAGTGGAGAAGAAGTAGCCATCAAGCTGGAATCAGTGAAGACCAAACACCCTCAGCTTCACTATGAATCAAAAATTTATATGCTTCTCCAAGGAGGAACTGGCATTCCCAACTTGAAATGGTTTGGAGTTGAGGGCGAATATAGTATTATGGTGATAGACCTTCTGGGGCC...

Protein

2 records

下载 Protein FASTA

XP_057798137.1
MDHVVGGKFKLGRKIGCGSFGELFLGVNIQSGEEVAIKLESVKTKHPQLHYESKIYMLLQGGTGIPNLKWFGVEGEYSIMVIDLLGPSLEDLFNYCNRKFSLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDFGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMLTPIEVLCKSYPSEFISYFHYCRSLRF...

XP_057798138.1
MDHVVGGKFKLGRKIGCGSFGELFLGVNIQSGEEVAIKLESVKTKHPQLHYESKIYMLLQGGTGIPNLKWFGVEGEYSIMVIDLLGPSLEDLFNYCNRKFSLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDFGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMLTPIEVLCKSYPSEFISYFHYCRSLRF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器