当前解析结果
SmilChr03G003358| 统一新 Gene ID | SmilChr03G003358 |
|---|---|
| 名称 | SmilChr03G003358 |
| 描述 | uncharacterized SmilChr03G003358 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 51929429 - 51930661 / + |
| NCBI Gene ID | LOC131018964 |
|---|---|
| GeneID | 131018964 |
| locus_tag | - |
| NCBI Name | LOC131018964 |
| 原始查询 | SmilChr03G003358 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3766669]; symbol=MUG3; hit=AT1G06740; species=arabidopsis; confidence=low |
| 产物 | MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3766669]; symbol=MUG3; hit=AT1G06740; species=arabidopsis; confidence=low |
| Arabidopsis | AT1G06740 (MUG3)MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3766669] identity=27.7; qcov=0.756; evalue=3.41e-30; confidence=low |
| Rice | Os01g0595300- identity=33.5; qcov=0.502; evalue=1.84e-28; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF03108 (DBD_Tnp_Mut); PF26130 (PB1-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018964 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057803630.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057803630.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057803630.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057803630.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057803630.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:51929497 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B102 |
Chr3:51929682 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B22,B30,D2,D8 |
Chr3:51929807 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B139,C41,C77 |
Chr3:51929894 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C42 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057803630.1PF26130
PB1-like 6-97 aa
PF03108
DBD_Tnp_Mut 186-247 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803630.1 |
Pfam | PF26130 |
PB1-like | Domain | 6 | 97 | 3.3e-09 | 37.7 | PB1-like domain |
XP_057803630.1 |
Pfam | PF03108 |
DBD_Tnp_Mut | Family | 186 | 247 | 9.9e-13 | 48.3 | MuDR family transposase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。