当前解析结果
SmilChr03G003373| 统一新 Gene ID | SmilChr03G003373 |
|---|---|
| 名称 | SmilChr03G003373 |
| 描述 | uncharacterized SmilChr03G003373 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 52076917 - 52079468 / + |
| NCBI Gene ID | LOC131018968 |
|---|---|
| GeneID | 131018968 |
| locus_tag | - |
| NCBI Name | LOC131018968 |
| 原始查询 | SmilChr03G003373 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os12g0597300; species=rice; confidence=low |
| 产物 | hit=Os12g0597300; species=rice; confidence=low |
| Arabidopsis | AT1G06740 (MUG3)MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3766669] identity=24.3; qcov=0.874; evalue=2.44e-54; confidence=weak |
| Rice | Os12g0597300- identity=27.7; qcov=0.759; evalue=1.41e-62; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00872 (Transposase_mut); PF04434 (SWIM); PF10551 (MULE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018968 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057803635.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057803635.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057803635.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057803635.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057803635.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:52077632 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C48,C87 |
Chr3:52077643 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B80,C70 |
Chr3:52077646 |
G |
GT |
1bp_insertion | stop_gained,frameshift_variant | 9 | A22,A7,B33,B43,C27,C33,C56,D2,D9 |
Chr3:52077694 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A14,B30,C36 |
Chr3:52077703 |
C |
T |
EMS_canonical_SNV | stop_gained | 22 | B12,B122,B131,B140,B19,B27,B44,B79,B8,B85,B88,B99,C1,C11,C18,C36,C37,C46,C53,C69,C86,C87 |
Chr3:52077716 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A5,B60,B76,C87 |
Chr3:52077719 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B34,C13,D7 |
Chr3:52077724 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C43 |
Chr3:52077736 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B34,D7 |
Chr3:52077747 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B120,C36,C59 |
Chr3:52077782 |
A |
AT |
1bp_insertion | frameshift_variant | 10 | A18,B100,B114,C16,C2,C54,C69,C85,C9,D8 |
Chr3:52077788 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B122,B94,B99,C8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803635.1PF00872
Transposase_mut 407-508 aa
PF10551
MULE 409-503 aa
PF04434
SWIM 626-656 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803635.1 |
Pfam | PF00872 |
Transposase_mut | Family | 407 | 508 | 6.6e-12 | 45.7 | Transposase, Mutator family |
XP_057803635.1 |
Pfam | PF10551 |
MULE | Domain | 409 | 503 | 3.5e-21 | 76.1 | MULE transposase domain |
XP_057803635.1 |
Pfam | PF04434 |
SWIM | Domain | 626 | 656 | 3.8e-06 | 27.0 | SWIM zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。