Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003383`

染色体: Chr03 坐标: 52191407-52197615 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003383`
名称	SmilChr03G003383
描述	protein PHOSPHATE STARVATION RESPONSE 1-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	52191407 - 52197615 / `-`

ID 对照

NCBI Gene ID	`LOC131014274`
GeneID	`131014274`
locus_tag	`-`
NCBI Name	`LOC131014274`
原始查询	`SmilChr03G003383`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein PHOSPHATE STARVATION RESPONSE 1-like
产物	protein PHOSPHATE STARVATION RESPONSE 1-like
Arabidopsis	`AT4G28610` (PHR1) phosphate starvation response 1 [Source:NCBI gene (formerly Entrezgene);Acc:828979] identity=49.6; qcov=0.876; evalue=8.06e-102; confidence=high
Rice	`Os03g0329900` (PHR1) - identity=48.4; qcov=0.724; evalue=1.91e-83; confidence=high
GO	GO:0003677 (DNA binding); GO:0003700 (DNA-binding transcription factor activity)
KEGG	-
Pfam	PF00249 (Myb_DNA-binding); PF14379 (Myb_CC_LHEQLE)
InterPro	-
eggNOG	-
NR	GeneID:131014274

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057798177.1`
2	Chromosome	染色体	0.00000	`XP_057798177.1`
3	Centromere	着丝粒	0.00000	`XP_057798177.1`
4	Chromatin	染色质	0.00000	`XP_057798177.1`
5	Telomere	端粒	0.00000	`XP_057798177.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:52191743`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:52191847`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr3:52191849`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B31,B69,C1,C46
`Chr3:52193712`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B102,C81
`Chr3:52194016`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C27
`Chr3:52195089`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B102,C81
`Chr3:52195147`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr3:52195599`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B125,C73
`Chr3:52195710`	`AGG`	`A`	2bp_deletion	frameshift_variant	110	A1,A13,A14,A20,A23,A3,B10,B100,B101,B102,B103,B104,B106,B108,B109,B112,B113,B115,B119,B120,B121,B124,B125,B129,B132,B134,B138,B139,B140,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B25,B26,B36,B38,B39,B42,B43,B49,B5,B50,B54,B55,B56,B58,B59,B6,B63,B66,B68,B69,B71,B74,B78,B79,B83,B84,B85,B86,B87,B88,B90,B92,B96,B98,C15,C16,C17,C19,C22,C23,C26,C28,C29,C30,C33,C35,C37,C38,C4,C40,C43,C47,C49,C5,C54,C56,C59,C65,C67,C70,C73,C74,C75,C76,C83,C85,C86,C9,D1,D11,D6
`Chr3:52195715`	`A`	`ATT`	2bp_insertion	frameshift_variant	110	A1,A13,A14,A20,A23,A3,B10,B100,B101,B102,B103,B104,B106,B108,B109,B112,B113,B115,B119,B120,B121,B124,B125,B129,B132,B134,B138,B139,B140,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B25,B26,B36,B38,B39,B42,B43,B49,B5,B50,B54,B55,B56,B58,B59,B6,B63,B66,B68,B69,B71,B74,B78,B79,B83,B84,B85,B86,B87,B88,B90,B92,B96,B98,C15,C16,C17,C19,C22,C23,C26,C28,C29,C30,C33,C35,C37,C38,C4,C40,C43,C47,C49,C5,C54,C56,C59,C65,C67,C70,C73,C74,C75,C76,C83,C85,C86,C9,D1,D11,D6
`Chr3:52195850`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C43
`Chr3:52195965`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798177.1

474 aa

237

474

Myb_DNA-binding

Myb_CC_LHEQLE

PF00249 Myb_DNA-binding 263-314 aa PF14379 Myb_CC_LHEQLE 346-392 aa

XP_057798178.1

474 aa

237

474

Myb_DNA-binding

Myb_CC_LHEQLE

PF00249 Myb_DNA-binding 263-314 aa PF14379 Myb_CC_LHEQLE 346-392 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798177.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	263	314	1.4e-10	41.8	Myb-like DNA-binding domain
`XP_057798177.1`	Pfam	`PF14379`	Myb_CC_LHEQLE	Family	346	392	2.1e-25	88.9	MYB-CC type transfactor, LHEQLE motif
`XP_057798178.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	263	314	1.4e-10	41.8	Myb-like DNA-binding domain
`XP_057798178.1`	Pfam	`PF14379`	Myb_CC_LHEQLE	Family	346	392	2.1e-25	88.9	MYB-CC type transfactor, LHEQLE motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057942194.1
AGAGGGCACAACACGCTCTATGGAAGGCGCGTTAGTGAGATGAGTATAAAATTGATAGGAAGAAAAGAAGCCAAACTCGAATAGAAGAGAAGAGGGCACTCCCCACCGTATAATTCTTTTCCGCCATTCGCCGGCGACCGAACCTCCCGCCAACGGTAGCGCGTGGCATCCCAACCCGCCTCTACAAGCAGGGCAATAAATCGCGTATACACACGTGTATCTTATACGCCATATTGCTAAGCTATAACGGGATTGTGGCT...

XM_057942195.1
CGTTAGTGAGATGAGTATAAAATTGATAGGAAGAAAAGAAGCCAAACTCGAATAGAAGAGAAGAGGGCACTCCCCACCGTATAATTCTTTTCCGCCATTCGCCGGCGACCGAACCTCCCGCCAACGGTAGCGCGTGGCATCCCAACCCGCCTCTACAAGCAGGGCAATAAATCGCGTATACACACGTGTATCTTATACGCCATATTGCTAAGCTATAACGGGATTGTGGCTTAGATTTTTTATATCATCTCAATAATTCG...

CDS

2 records

下载 CDS FASTA

LOC131014274
ATGGAAACAAAACATGCTTTACCTATTCAAAGATCAGGCCCAAGACAAATTAGTAGCATCGGGGCCTCGGCATCTCTATCTGCTTCATTTAATGTTCCTCCAACTGTCCTGGAAGAGACATATCCAAGATTTTCTGAATCGCAGCAGGTTTCCTTAGAGAGGGAACTCATGCAGCGTCCTCCAGCTGTTGTTTCATCTTTGTCCTCCAACAGTGGGGTTGTTGGGCATATATTTTCTTCTTCATCAGGAATTTCTACTGA...

Protein

2 records

下载 Protein FASTA

XP_057798177.1
METKHALPIQRSGPRQISSIGASASLSASFNVPPTVLEETYPRFSESQQVSLERELMQRPPAVVSSLSSNSGVVGHIFSSSSGISTDLHFSSIQQQQENPPRQSPFISQSTSSRKSVTLPHSVDSQLLQSTASSHFNKENNESWCTDTLPDFLDFPMSTAIQSSQLYGSKSSGITIPHEDLGKPNDWQDWADQLITDNDALTADWSGLLADASVADPEPKHSQQCPSISNQQPHIPQQLPSTSGEICTSGAQSSSNAAPG...

XP_057798178.1
METKHALPIQRSGPRQISSIGASASLSASFNVPPTVLEETYPRFSESQQVSLERELMQRPPAVVSSLSSNSGVVGHIFSSSSGISTDLHFSSIQQQQENPPRQSPFISQSTSSRKSVTLPHSVDSQLLQSTASSHFNKENNESWCTDTLPDFLDFPMSTAIQSSQLYGSKSSGITIPHEDLGKPNDWQDWADQLITDNDALTADWSGLLADASVADPEPKHSQQCPSISNQQPHIPQQLPSTSGEICTSGAQSSSNAAPG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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