Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003427`

染色体: Chr03 坐标: 52602983-52606903 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003427`
名称	SmilChr03G003427
描述	LRR receptor-like serine/threonine-protein kinase RGI2
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	52602983 - 52606903 / `+`

ID 对照

NCBI Gene ID	`LOC131014316`
GeneID	`131014316`
locus_tag	`-`
NCBI Name	`LOC131014316`
原始查询	`SmilChr03G003427`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	LRR receptor-like serine/threonine-protein kinase RGI2
产物	LRR receptor-like serine/threonine-protein kinase RGI2
Arabidopsis	`AT5G48940` (AT5G48940) Leucine-rich repeat transmembrane protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:834952] identity=63.1; qcov=0.961; evalue=0; confidence=high
Rice	`Os04g0132500` (CTB4a) - identity=59.3; qcov=0.954; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131014316

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057798231.1`
2	Nucleus	细胞核	0.00000	`XP_057798231.1`
3	Chromosome	染色体	0.00000	`XP_057798231.1`
4	Centromere	着丝粒	0.00000	`XP_057798231.1`
5	Chromatin	染色质	0.00000	`XP_057798231.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:52603671`	`A`	`ATT`	2bp_insertion	frameshift_variant	2	A20,B54
`Chr3:52603671`	`A`	`ATT`	2bp_insertion	CDS_variant	2	A20,B54
`Chr3:52603673`	`C`	`CAA`	2bp_insertion	frameshift_variant	2	A20,B54
`Chr3:52603673`	`C`	`CAA`	2bp_insertion	CDS_variant	2	A20,B54
`Chr3:52603678`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B102,B26,B38,B39,C86
`Chr3:52603679`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr3:52603741`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D1
`Chr3:52603846`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B94,C49,C57
`Chr3:52603916`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B48
`Chr3:52604074`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:52604096`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr3:52604138`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798231.1

1113 aa

556

1113

LRRNT_2

LRR_1

LRR_8

LRR_1

LRR_14

LRR_1

LRR_8

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 42-81 aa PF00560 LRR_1 110-131 aa PF00560 LRR_1 133-155 aa PF13855 LRR_8 133-192 aa PF00560 LRR_1 157-179 aa PF00560 LRR_1 181-203 aa PF23598 LRR_14 224-396 aa PF00560 LRR_1 302-324 aa PF13855 LRR_8 325-385 aa PF00560 LRR_1 326-348 aa PF00560 LRR_1 350-371 aa PF13855 LRR_8 405-457 aa PF00560 LRR_1 422-444 aa PF00560 LRR_1 494-516 aa PF00560 LRR_1 518-540 aa PF00560 LRR_1 542-564 aa PF00069 Pkinase 782-1049 aa PF07714 PK_Tyr_Ser-Thr 783-1052 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798231.1`	Pfam	`PF08263`	LRRNT_2	Family	42	81	5.7e-07	30.4	Leucine rich repeat N-terminal domain
`XP_057798231.1`	Pfam	`PF00560`	LRR_1	Repeat	110	131	1.9e-59	185.4	Leucine Rich Repeat
`XP_057798231.1`	Pfam	`PF00560`	LRR_1	Repeat	133	155	1.9e-59	185.4	Leucine Rich Repeat
`XP_057798231.1`	Pfam	`PF13855`	LRR_8	Repeat	133	192	3.4e-43	146.0	Leucine rich repeat
`XP_057798231.1`	Pfam	`PF00560`	LRR_1	Repeat	157	179	1.9e-59	185.4	Leucine Rich Repeat
`XP_057798231.1`	Pfam	`PF00560`	LRR_1	Repeat	181	203	1.9e-59	185.4	Leucine Rich Repeat
`XP_057798231.1`	Pfam	`PF23598`	LRR_14	Repeat	224	396	2.9e-43	148.7	Leucine-rich repeat region
`XP_057798231.1`	Pfam	`PF00560`	LRR_1	Repeat	302	324	1.9e-59	185.4	Leucine Rich Repeat
`XP_057798231.1`	Pfam	`PF13855`	LRR_8	Repeat	325	385	3.4e-43	146.0	Leucine rich repeat
`XP_057798231.1`	Pfam	`PF00560`	LRR_1	Repeat	326	348	1.9e-59	185.4	Leucine Rich Repeat
`XP_057798231.1`	Pfam	`PF00560`	LRR_1	Repeat	350	371	1.9e-59	185.4	Leucine Rich Repeat
`XP_057798231.1`	Pfam	`PF13855`	LRR_8	Repeat	405	457	3.4e-43	146.0	Leucine rich repeat
`XP_057798231.1`	Pfam	`PF00560`	LRR_1	Repeat	422	444	1.9e-59	185.4	Leucine Rich Repeat
`XP_057798231.1`	Pfam	`PF00560`	LRR_1	Repeat	494	516	1.9e-59	185.4	Leucine Rich Repeat
`XP_057798231.1`	Pfam	`PF00560`	LRR_1	Repeat	518	540	1.9e-59	185.4	Leucine Rich Repeat
`XP_057798231.1`	Pfam	`PF00560`	LRR_1	Repeat	542	564	1.9e-59	185.4	Leucine Rich Repeat
`XP_057798231.1`	Pfam	`PF00069`	Pkinase	Domain	782	1049	4.3e-40	138.5	Protein kinase domain
`XP_057798231.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	783	1052	4.6e-42	144.8	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057942248.1
AAAACAATTTTTTTTTCTAAATTTTACTAATAATACATATGAAATTCTTTCTTCTATCAACCTATGGCATTGATTAGATGACTTATGACCCATGCTACAATAAATGAAAGTTGGAATCAAATTTAAAATATAGTAGACGAAATGATATTATGAAAGAGGTTGATTTGGTTAGGCAGAGGTGTGTGTTTATTTCTGCATATTTTGGTTTGTTGGGTGCAAAGATTTAGCCATAGAAAGCAGTGAAATCGAGAAAACAAAAA...

CDS

1 records

下载 CDS FASTA

LOC131014316
ATGCCGAGGCATTTCTTGAACGCCGCCCCCAATTTCTACCACCTCCGCCGCCGCCACCACCACTATTTCTTCTATTTCCTCTTCATTCTCTCTCACACAGCTCCTTCTCCCCTCTCCGCCGCCAACTCCGAGGTCGCCCTACTCTTCTCATGGCTCAACTCTTCTTCTTCTCCGGCACCGGCATTCTCAAACTGGAATCCTCAAGATTCCGACCCCTGCAAATGGTCATTCATTTCATGCTCGTCCAGTAATTTTGTGAC...

Protein

1 records

下载 Protein FASTA

XP_057798231.1
MPRHFLNAAPNFYHLRRRHHHYFFYFLFILSHTAPSPLSAANSEVALLFSWLNSSSSPAPAFSNWNPQDSDPCKWSFISCSSSNFVTKINIQSLHLALPFPSNLSSLIFLETLTISGANLTGEIPPDIGDCASLRAIDVSSNSLVGSIPETIGKLKNLEELILNSNQLTGKIPAEIGNCISLKSLVLFDNRLSGSIPPELGKLSALEILRAGGNQDIEGRFPDEISNCENLQVLGLAETKISGKIPASFGKLGKLQVLSL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器