Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003431`

染色体: Chr03 坐标: 52666531-52691520 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003431`
名称	SmilChr03G003431
描述	DNA-directed RNA polymerase III subunit 2-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	52666531 - 52691520 / `+`

ID 对照

NCBI Gene ID	`LOC131014321`
GeneID	`131014321`
locus_tag	`-`
NCBI Name	`LOC131014321`
原始查询	`SmilChr03G003431`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DNA-directed RNA polymerase III subunit 2-like
产物	DNA-directed RNA polymerase III subunit 2-like
Arabidopsis	`AT5G45140` (NRPC2) nuclear RNA polymerase C2 [Source:NCBI gene (formerly Entrezgene);Acc:834550] identity=76.7; qcov=1.01; evalue=0; confidence=high
Rice	`Os03g0403100` - identity=73; qcov=1.01; evalue=0; confidence=high
GO	GO:0003677 (DNA binding); GO:0003899 (DNA-directed RNA polymerase activity); GO:0005666 (RNA polymerase III complex); GO:0006351 (DNA-templated transcription); GO:0032549 (ribonucleoside binding)
KEGG	smil03020 (RNA polymerase - Salvia miltiorrhiza (redroot sage))
Pfam	PF00562 (RNA_pol_Rpb2_6); PF04560 (RNA_pol_Rpb2_7); PF04561 (RNA_pol_Rpb2_2); PF04563 (RNA_pol_Rpb2_1); PF04565 (RNA_pol_Rpb2_3); PF04566 (RNA_pol_Rpb2_4); PF04567 (RNA_pol_Rpb2_5)
InterPro	-
eggNOG	-
NR	GeneID:131014321

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057798235.1`
2	Nucleolus	核仁	0.80000	`XP_057798235.1`
3	Nucleoplasm	核质	0.40000	`XP_057798237.1`
4	Chromosome	染色体	0.20000	`XP_057798235.1`
5	Nucleolar fibrillar center	Nucleolar fibrillar center	0.20000	`XP_057798235.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:52667785`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:52668039`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:52668830`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:52668996`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B134,B138
`Chr3:52668999`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C50
`Chr3:52672573`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C73
`Chr3:52673245`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C81
`Chr3:52674428`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr3:52674596`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C54
`Chr3:52677675`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:52677772`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C54
`Chr3:52678910`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798235.1

1163 aa

582

1163

RNA_pol_Rpb2_1

RNA_pol_Rpb2_2

RNA_pol_Rpb2_3

RNA_pol_Rpb2_4

RNA_pol_Rpb2_5

RNA_pol_Rpb2_6

RNA_pol_Rpb2_7

PF04563 RNA_pol_Rpb2_1 48-431 aa PF04561 RNA_pol_Rpb2_2 195-381 aa PF04565 RNA_pol_Rpb2_3 457-521 aa PF04566 RNA_pol_Rpb2_4 558-618 aa PF04567 RNA_pol_Rpb2_5 640-672 aa PF00562 RNA_pol_Rpb2_6 687-1066 aa PF04560 RNA_pol_Rpb2_7 1068-1158 aa

XP_057798236.1

1163 aa

582

1163

RNA_pol_Rpb2_1

RNA_pol_Rpb2_2

RNA_pol_Rpb2_3

RNA_pol_Rpb2_4

RNA_pol_Rpb2_5

RNA_pol_Rpb2_6

RNA_pol_Rpb2_7

XP_057798237.1

1156 aa

578

1156

RNA_pol_Rpb2_1

RNA_pol_Rpb2_2

RNA_pol_Rpb2_3

RNA_pol_Rpb2_4

RNA_pol_Rpb2_5

RNA_pol_Rpb2_6

RNA_pol_Rpb2_7

PF04563 RNA_pol_Rpb2_1 48-424 aa PF04561 RNA_pol_Rpb2_2 195-374 aa PF04565 RNA_pol_Rpb2_3 450-514 aa PF04566 RNA_pol_Rpb2_4 551-611 aa PF04567 RNA_pol_Rpb2_5 633-665 aa PF00562 RNA_pol_Rpb2_6 680-1059 aa PF04560 RNA_pol_Rpb2_7 1061-1151 aa

XP_057798238.1

1012 aa

506

1012

RNA_pol_Rpb2_1

RNA_pol_Rpb2_2

RNA_pol_Rpb2_3

RNA_pol_Rpb2_4

RNA_pol_Rpb2_5

RNA_pol_Rpb2_6

RNA_pol_Rpb2_7

PF04563 RNA_pol_Rpb2_1 1-280 aa PF04561 RNA_pol_Rpb2_2 44-230 aa PF04565 RNA_pol_Rpb2_3 306-370 aa PF04566 RNA_pol_Rpb2_4 407-467 aa PF04567 RNA_pol_Rpb2_5 489-521 aa PF00562 RNA_pol_Rpb2_6 536-915 aa PF04560 RNA_pol_Rpb2_7 917-1007 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798235.1`	Pfam	`PF04563`	RNA_pol_Rpb2_1	Family	48	431	5.1e-53	180.4	RNA polymerase beta subunit
`XP_057798235.1`	Pfam	`PF04561`	RNA_pol_Rpb2_2	Domain	195	381	6e-21	75.7	RNA polymerase Rpb2, domain 2
`XP_057798235.1`	Pfam	`PF04565`	RNA_pol_Rpb2_3	Domain	457	521	5.4e-20	72.0	RNA polymerase Rpb2, domain 3
`XP_057798235.1`	Pfam	`PF04566`	RNA_pol_Rpb2_4	Domain	558	618	4.1e-21	75.5	RNA polymerase Rpb2, domain 4
`XP_057798235.1`	Pfam	`PF04567`	RNA_pol_Rpb2_5	Domain	640	672	3.2e-07	31.8	RNA polymerase Rpb2, domain 5
`XP_057798235.1`	Pfam	`PF00562`	RNA_pol_Rpb2_6	Domain	687	1066	2.2e-137	458.9	RNA polymerase Rpb2, domain 6
`XP_057798235.1`	Pfam	`PF04560`	RNA_pol_Rpb2_7	Domain	1068	1158	3.2e-31	108.3	RNA polymerase Rpb2, domain 7
`XP_057798236.1`	Pfam	`PF04563`	RNA_pol_Rpb2_1	Family	48	431	5.1e-53	180.4	RNA polymerase beta subunit
`XP_057798236.1`	Pfam	`PF04561`	RNA_pol_Rpb2_2	Domain	195	381	6e-21	75.7	RNA polymerase Rpb2, domain 2
`XP_057798236.1`	Pfam	`PF04565`	RNA_pol_Rpb2_3	Domain	457	521	5.4e-20	72.0	RNA polymerase Rpb2, domain 3
`XP_057798236.1`	Pfam	`PF04566`	RNA_pol_Rpb2_4	Domain	558	618	4.1e-21	75.5	RNA polymerase Rpb2, domain 4
`XP_057798236.1`	Pfam	`PF04567`	RNA_pol_Rpb2_5	Domain	640	672	3.2e-07	31.8	RNA polymerase Rpb2, domain 5
`XP_057798236.1`	Pfam	`PF00562`	RNA_pol_Rpb2_6	Domain	687	1066	2.2e-137	458.9	RNA polymerase Rpb2, domain 6
`XP_057798236.1`	Pfam	`PF04560`	RNA_pol_Rpb2_7	Domain	1068	1158	3.2e-31	108.3	RNA polymerase Rpb2, domain 7
`XP_057798237.1`	Pfam	`PF04563`	RNA_pol_Rpb2_1	Family	48	424	5e-53	180.4	RNA polymerase beta subunit
`XP_057798237.1`	Pfam	`PF04561`	RNA_pol_Rpb2_2	Domain	195	374	2.9e-21	76.7	RNA polymerase Rpb2, domain 2
`XP_057798237.1`	Pfam	`PF04565`	RNA_pol_Rpb2_3	Domain	450	514	5.4e-20	72.1	RNA polymerase Rpb2, domain 3
`XP_057798237.1`	Pfam	`PF04566`	RNA_pol_Rpb2_4	Domain	551	611	4.1e-21	75.5	RNA polymerase Rpb2, domain 4
`XP_057798237.1`	Pfam	`PF04567`	RNA_pol_Rpb2_5	Domain	633	665	3.1e-07	31.8	RNA polymerase Rpb2, domain 5
`XP_057798237.1`	Pfam	`PF00562`	RNA_pol_Rpb2_6	Domain	680	1059	2.1e-137	459.0	RNA polymerase Rpb2, domain 6
`XP_057798237.1`	Pfam	`PF04560`	RNA_pol_Rpb2_7	Domain	1061	1151	3.1e-31	108.3	RNA polymerase Rpb2, domain 7
`XP_057798238.1`	Pfam	`PF04563`	RNA_pol_Rpb2_1	Family	1	280	8.9e-22	78.4	RNA polymerase beta subunit
`XP_057798238.1`	Pfam	`PF04561`	RNA_pol_Rpb2_2	Domain	44	230	4.6e-21	76.1	RNA polymerase Rpb2, domain 2
`XP_057798238.1`	Pfam	`PF04565`	RNA_pol_Rpb2_3	Domain	306	370	4.6e-20	72.3	RNA polymerase Rpb2, domain 3
`XP_057798238.1`	Pfam	`PF04566`	RNA_pol_Rpb2_4	Domain	407	467	3.4e-21	75.8	RNA polymerase Rpb2, domain 4
`XP_057798238.1`	Pfam	`PF04567`	RNA_pol_Rpb2_5	Domain	489	521	2.6e-07	32.1	RNA polymerase Rpb2, domain 5
`XP_057798238.1`	Pfam	`PF00562`	RNA_pol_Rpb2_6	Domain	536	915	1.6e-137	459.4	RNA polymerase Rpb2, domain 6
`XP_057798238.1`	Pfam	`PF04560`	RNA_pol_Rpb2_7	Domain	917	1007	2.6e-31	108.6	RNA polymerase Rpb2, domain 7

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XR_009098171.1
CGGACAATATTTTTCACTTCTAATTTCCATCTCATTCTTCCTCTTCACTACTGCAACCGCGCCTCCACGCCGCTGCCGCCGTCGGGTCTGCGCCTCCAACTCTGCCGCCTCGAGCGCGACTGCGCCGCTAGCTTCTGCGTGGGTCTGCCCCCATAAGAGAGAAGTACGAGATGGTAGCGAGAGAAGACGACCCAGCTTTGTTCAATGATTTACAGGATAAAGGACTGGAAATTGACAAACAAGCTCTTGCGGCCCCTGTG...

XM_057942252.1
GGACAATATTTTTCACTTCTAATTTCCATCTCATTCTTCCTCTTCACTACTGCAACCGCGCCTCCACGCCGCTGCCGCCGTCGGGTCTGCGCCTCCAACTCTGCCGCCTCGAGCGCGACTGCGCCGCTAGCTTCTGCGTGGGTCTGCCCCCATAAGAGAGAAGTACGAGATGGTAGCGAGAGAAGACGACCCAGCTTTGTTCAATGATTTACAGGATAAAGGACTGGAAATTGACAAACAAGCTCTTGCGGCCCCTGTGA...

CDS

4 records

下载 CDS FASTA

LOC131014321
ATGGTAGCGAGAGAAGACGACCCAGCTTTGTTCAATGATTTACAGGATAAAGGACTGGAAATTGACAAACAAGCTCTTGCGGCCCCTGTGAAGAATGCAGTTGACAAGTTCCAATTAGTCCCTGAATTCTTGAAGGTGAGAGGTCTTGTCAAACAACATTTGGACTCCTTTAATTTCTTTGTACGAACAGGGATAAAAAAGATTGTTCAAGCCAATAATCTCGTCACCTCTAGTCGAGACCCAAATATTTATTTGAGATA...

Protein

4 records

下载 Protein FASTA

XP_057798235.1
MVAREDDPALFNDLQDKGLEIDKQALAAPVKNAVDKFQLVPEFLKVRGLVKQHLDSFNFFVRTGIKKIVQANNLVTSSRDPNIYLRYKDVRIGEPSMMGDTVTDLLNPQKCRLYDITYAAPIYVNIEYSNGNYDGNRTQMKKDVVIGRLPIMLKSCCCILYGKDEEELARYGECPLDPGGYFIVKGTEKVILMQEQLSKNRIIIDTDKKGCVQASVTSSSETKKSKTVIRFEKEKIYLQLTGFTTKVPIMIVLKAMGMES...

XP_057798236.1
MVAREDDPALFNDLQDKGLEIDKQALAAPVKNAVDKFQLVPEFLKVRGLVKQHLDSFNFFVRTGIKKIVQANNLVTSSRDPNIYLRYKDVRIGEPSMMGDTVTDLLNPQKCRLYDITYAAPIYVNIEYSNGNYDGNRTQMKKDVVIGRLPIMLKSCCCILYGKDEEELARYGECPLDPGGYFIVKGTEKVILMQEQLSKNRIIIDTDKKGCVQASVTSSSETKKSKTVIRFEKEKIYLQLTGFTTKVPIMIVLKAMGMES...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器