当前解析结果
SmilChr03G003440| 统一新 Gene ID | SmilChr03G003440 |
|---|---|
| 名称 | SmilChr03G003440 |
| 描述 | uncharacterized SmilChr03G003440 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 52793207 - 52796355 / + |
| NCBI Gene ID | LOC131014330 |
|---|---|
| GeneID | 131014330 |
| locus_tag | - |
| NCBI Name | LOC131014330 |
| 原始查询 | SmilChr03G003440 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | inactive rhomboid protein [Source:NCBI gene (formerly Entrezgene);Acc:831133]; symbol=AT5G12930; hit=AT5G12930; species=arabidopsis; confidence=medium |
| 产物 | inactive rhomboid protein [Source:NCBI gene (formerly Entrezgene);Acc:831133]; symbol=AT5G12930; hit=AT5G12930; species=arabidopsis; confidence=medium |
| Arabidopsis | AT5G12930 (AT5G12930)inactive rhomboid protein [Source:NCBI gene (formerly Entrezgene);Acc:831133] identity=44.2; qcov=0.865; evalue=9.43e-85; confidence=medium |
| Rice | Os09g0488600- identity=36.5; qcov=1.03; evalue=3.92e-59; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014330 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus membrane | 核膜 | 1.00000 | XP_057798246.1 |
| 2 | Nucleus | 细胞核 | 0.40000 | XP_057798246.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057798246.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057798246.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057798246.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:52793509 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B81 |
Chr3:52793622 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B119,C54 |
Chr3:52793733 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B112,B13,B137 |
Chr3:52794381 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr3:52794615 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A20,B44 |
Chr3:52794651 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B103 |
Chr3:52795353 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:52795548 |
TC |
T |
1bp_deletion | frameshift_variant | 3 | B18,B70,C47 |
Chr3:52795548 |
TC |
T |
1bp_deletion | CDS_variant | 3 | B18,B70,C47 |
Chr3:52795830 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。