当前解析结果
SmilChr03G003447| 统一新 Gene ID | SmilChr03G003447 |
|---|---|
| 名称 | SmilChr03G003447 |
| 描述 | uncharacterized SmilChr03G003447 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 52825218 - 52828784 / + |
| NCBI Gene ID | LOC131014334 |
|---|---|
| GeneID | 131014334 |
| locus_tag | - |
| NCBI Name | LOC131014334 |
| 原始查询 | SmilChr03G003447 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:826815]; symbol=AT4G12070; hit=AT4G12070; species=arabidopsis; confidence=high |
| 产物 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:826815]; symbol=AT4G12070; hit=AT4G12070; species=arabidopsis; confidence=high |
| Arabidopsis | AT4G12070 (AT4G12070)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:826815] identity=71.6; qcov=0.793; evalue=0; confidence=high |
| Rice | Os02g0717600- identity=49.4; qcov=1.09; evalue=3.95e-173; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014334 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057798249.1 |
| 2 | Golgi apparatus | 高尔基体 | 0.20000 | XP_057798249.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057798249.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057798249.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057798249.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:52825722 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C54 |
Chr3:52825875 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | C29,C36,C39,C85,D2 |
Chr3:52827663 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr3:52827808 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B100,B117,B53,B77,B8 |
Chr3:52827848 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B117,B53,B77,B8 |
Chr3:52827877 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C27,C64,C66 |
Chr3:52827897 |
TCA |
T |
2bp_deletion | frameshift_variant | 1 | C7 |
Chr3:52827897 |
TCA |
T |
2bp_deletion | CDS_variant | 1 | C7 |
Chr3:52828122 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B134 |
Chr3:52828144 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B102,B26,B38,B39,C86 |
Chr3:52828165 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C28,C74,D11 |
Chr3:52828336 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。