Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003450`

染色体: Chr03 坐标: 52861403-52865154 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003450`
名称	SmilChr03G003450
描述	uncharacterized SmilChr03G003450
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	52861403 - 52865154 / `-`

ID 对照

NCBI Gene ID	`LOC131014338`
GeneID	`131014338`
locus_tag	`-`
NCBI Name	`LOC131014338`
原始查询	`SmilChr03G003450`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	SNARE associated Golgi protein family [Source:NCBI gene (formerly Entrezgene);Acc:814768]; symbol=AT2G02370; hit=AT2G02370; species=arabidopsis; confidence=high
产物	SNARE associated Golgi protein family [Source:NCBI gene (formerly Entrezgene);Acc:814768]; symbol=AT2G02370; hit=AT2G02370; species=arabidopsis; confidence=high
Arabidopsis	`AT2G02370` (AT2G02370) SNARE associated Golgi protein family [Source:NCBI gene (formerly Entrezgene);Acc:814768] identity=63; qcov=0.881; evalue=7.21e-145; confidence=high
Rice	`Os03g0374400` - identity=58.9; qcov=0.881; evalue=4.45e-131; confidence=high
GO	-
KEGG	-
Pfam	PF09335 (VTT_dom)
InterPro	-
eggNOG	-
NR	GeneID:131014338

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.80000	`XP_057798252.1`
2	Golgi apparatus	高尔基体	0.60000	`XP_057798253.1`
3	Endoplasmic reticulum membrane	内质网膜	0.40000	`XP_057798252.1`
4	Vacuole membrane	液泡膜	0.40000	`XP_057798253.1`
5	Vacuole	液泡	0.20000	`XP_057798253.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:52861560`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:52861666`	`GA`	`G`	1bp_deletion	frameshift_variant	1	B76
`Chr3:52861666`	`GA`	`G`	1bp_deletion	CDS_variant	1	B76
`Chr3:52861762`	`C`	`CGG`	2bp_insertion	frameshift_variant	1	D8
`Chr3:52861762`	`C`	`CGG`	2bp_insertion	CDS_variant	1	D8
`Chr3:52861786`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B122,B13,B33,B78
`Chr3:52861808`	`G`	`A`	EMS_canonical_SNV	stop_gained	6	A24,B117,B51,B82,C60,D11
`Chr3:52861816`	`G`	`GT`	1bp_insertion	frameshift_variant	127	A10,A11,A16,A18,A19,A22,A3,A5,A7,A8,B1,B100,B102,B103,B105,B110,B111,B114,B121,B124,B126,B127,B128,B129,B131,B135,B140,B17,B18,B19,B21,B24,B26,B27,B30,B31,B33,B38,B39,B4,B40,B41,B42,B43,B48,B50,B52,B55,B57,B58,B59,B60,B63,B64,B69,B70,B74,B75,B78,B83,B84,B87,B9,B90,B92,B95,B97,B98,B99,C1,C10,C11,C13,C14,C15,C17,C18,C20,C21,C22,C25,C26,C27,C28,C31,C33,C34,C37,C38,C4,C41,C44,C47,C48,C49,C5,C50,C51,C53,C54,C56,C57,C58,C6,C61,C64,C66,C69,C7,C71,C72,C74,C75,C76,C79,C8,C80,C82,C84,C85,C86,C9,D10,D4,D6,D7,D8
`Chr3:52862168`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C36
`Chr3:52862221`	`G`	`GAC`	2bp_insertion	frameshift_variant	110	A1,A11,A21,A24,A6,A7,B1,B102,B104,B106,B107,B110,B12,B125,B126,B127,B129,B130,B132,B133,B136,B138,B140,B16,B18,B2,B23,B25,B28,B33,B34,B35,B37,B38,B4,B40,B42,B44,B45,B46,B47,B5,B50,B52,B53,B54,B56,B57,B58,B59,B6,B61,B63,B66,B67,B70,B73,B74,B75,B76,B77,B80,B81,B83,B85,B86,B88,B91,B92,B93,C1,C15,C21,C26,C27,C28,C29,C3,C30,C33,C34,C35,C38,C40,C41,C42,C43,C5,C50,C51,C52,C53,C58,C59,C60,C63,C66,C67,C68,C69,C7,C82,C85,C86,D11,D2,D3,D5,D6,D9
`Chr3:52862229`	`GTC`	`G`	2bp_deletion	frameshift_variant	112	A1,A11,A21,A24,A6,A7,A8,B1,B102,B104,B106,B107,B110,B12,B125,B126,B127,B129,B130,B132,B133,B136,B138,B140,B16,B18,B2,B23,B25,B28,B33,B34,B35,B37,B38,B4,B40,B42,B44,B45,B46,B47,B5,B50,B52,B53,B54,B56,B57,B58,B59,B6,B61,B63,B66,B67,B70,B73,B74,B75,B76,B77,B80,B81,B83,B85,B86,B88,B91,B92,B93,C1,C15,C21,C26,C27,C28,C29,C3,C30,C33,C34,C35,C38,C40,C41,C42,C43,C5,C50,C51,C52,C53,C58,C59,C60,C63,C65,C66,C67,C68,C69,C7,C82,C85,C86,D11,D2,D3,D5,D6,D9
`Chr3:52863077`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A22,B77

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798252.1

394 aa

197

394

VTT_dom

PF09335 VTT_dom 157-274 aa

XP_057798253.1

362 aa

181

362

VTT_dom

PF09335 VTT_dom 157-277 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798252.1`	Pfam	`PF09335`	VTT_dom	Domain	157	274	8.6e-20	72.2	VTT domain
`XP_057798253.1`	Pfam	`PF09335`	VTT_dom	Domain	157	277	5.4e-21	76.1	VTT domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057942270.1
TTTTGGATCAAATATGCCTTCTTTTTCAAAATTTCGGATTCTTGAAGTATGTTTTAGGGTTTTCTTTTCATTTATTTCTCTTGAATCGTTAGGATTAATTGTTTTCTGGCATTCTGGTGTCTCAATGAAGATGCCAGATTCGATTGAGGAGCCAGAGAAAATAAAGCAGAATGAGAGTAAAGCTCAAGTAAAGGAAGATAGTGAGTATGTAAGATTGGTTATTCCAAATGAACTAAGGACACATGAAACATATGCAGTAT...

XM_057942269.1
TTTTGGATCAAATATGCCTTCTTTTTCAAAATTTCGGATTCTTGAAGTATGTTTTAGGGTTTTCTTTTCATTTATTTCTCTTGAATCGTTAGGATTAATTGTTTTCTGGCATTCTGGTGTCTCAATGAAGATGCCAGATTCGATTGAGGAGCCAGAGAAAATAAAGCAGAATGAGAGTAAAGCTCAAGTAAAGGAAGATAGTGAGTATGTAAGATTGGTTATTCCAAATGAACTAAGGACACATGAAACATATGCAGTAT...

CDS

2 records

下载 CDS FASTA

LOC131014338
ATGCCTTCTTTTTCAAAATTTCGGATTCTTGAAGTATGTTTTAGGGTTTTCTTTTCATTTATTTCTCTTGAATCGTTAGGATTAATTGTTTTCTGGCATTCTGGTGTCTCAATGAAGATGCCAGATTCGATTGAGGAGCCAGAGAAAATAAAGCAGAATGAGAGTAAAGCTCAAGTAAAGGAAGATAGTGAGTATGTAAGATTGGTTATTCCAAATGAACTAAGGACACATGAAACATATGCAGTATCTCCAACACAGCC...

Protein

2 records

下载 Protein FASTA

XP_057798252.1
MPSFSKFRILEVCFRVFFSFISLESLGLIVFWHSGVSMKMPDSIEEPEKIKQNESKAQVKEDSEYVRLVIPNELRTHETYAVSPTQPRKRSFAWWIRTIIWSSITIALLLVFVKYGVPFLVEKVLFPLLQWEATAFGRPLLALVIVASLALFPVFLIPSGPSMWLAGMIFGYGLGFIIIMVGTTIGMVLPYLIGLIFRDRIHQWLKRWPQKAAMIRLAGEGSWFHQFKVVALFRVSPFPYTIFNYAVVVTSMRFWPYLWG...

XP_057798253.1
MPSFSKFRILEVCFRVFFSFISLESLGLIVFWHSGVSMKMPDSIEEPEKIKQNESKAQVKEDSEYVRLVIPNELRTHETYAVSPTQPRKRSFAWWIRTIIWSSITIALLLVFVKYGVPFLVEKVLFPLLQWEATAFGRPLLALVIVASLALFPVFLIPSGPSMWLAGMIFGYGLGFIIIMVGTTIGMVLPYLIGLIFRDRIHQWLKRWPQKAAMIRLAGEGSWFHQFKVVALFRVSPFPYTIFNYAVVVTSMRFWPYLWG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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