Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003456`

染色体: Chr03 坐标: 52936768-52944705 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003456`
名称	SmilChr03G003456
描述	uncharacterized SmilChr03G003456
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	52936768 - 52944705 / `+`

ID 对照

NCBI Gene ID	`LOC131014343`
GeneID	`131014343`
locus_tag	`-`
NCBI Name	`LOC131014343`
原始查询	`SmilChr03G003456`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	organic solute transporter ostalpha protein (DUF300) [Source:NCBI gene (formerly Entrezgene);Acc:819764]; symbol=AT3G05940; hit=AT3G05940; species=arabidopsis; confidence=high
产物	organic solute transporter ostalpha protein (DUF300) [Source:NCBI gene (formerly Entrezgene);Acc:819764]; symbol=AT3G05940; hit=AT3G05940; species=arabidopsis; confidence=high
Arabidopsis	`AT3G05940` (AT3G05940) organic solute transporter ostalpha protein (DUF300) [Source:NCBI gene (formerly Entrezgene);Acc:819764] identity=73.8; qcov=0.993; evalue=0; confidence=high
Rice	`Os07g0244300` (OJ1341_A08.136) - identity=68; qcov=0.94; evalue=0; confidence=high
GO	GO:0005215 (transporter activity); GO:0006810 (transport)
KEGG	-
Pfam	PF03619 (Solute_trans_a)
InterPro	-
eggNOG	-
NR	GeneID:131014343

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasmic vesicle	细胞质囊泡	1.00000	`XP_057798260.1`
2	Endosome	内体	1.00000	`XP_057798260.1`
3	Secretory vesicle	Secretory vesicle	0.60000	`XP_057798260.1`
4	Vesicle	囊泡	0.60000	`XP_057798260.1`
5	Endosome membrane	内体膜	0.60000	`XP_057798260.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:52937761`	`ATC`	`A`	2bp_deletion	frameshift_variant	172	A10,A14,A15,A16,A18,A19,A20,A21,A23,A3,A4,A8,A9,B10,B100,B102,B103,B104,B106,B107,B108,B109,B11,B110,B111,B115,B117,B118,B119,B12,B120,B123,B125,B127,B128,B129,B13,B130,B131,B132,B133,B134,B136,B138,B139,B14,B140,B15,B20,B21,B22,B24,B25,B26,B27,B28,B29,B30,B33,B35,B37,B38,B39,B4,B40,B42,B43,B45,B48,B5,B50,B51,B54,B55,B56,B57,B58,B60,B61,B62,B64,B65,B66,B67,B68,B70,B71,B73,B75,B76,B77,B78,B79,B83,B86,B88,B89,B9,B90,B91,B93,B94,B95,B96,B98,B99,C10,C11,C12,C14,C15,C16,C17,C18,C19,C21,C23,C25,C26,C27,C30,C31,C32,C33,C34,C37,C39,C40,C42,C47,C48,C49,C5,C51,C52,C53,C54,C55,C56,C57,C59,C6,C60,C62,C63,C64,C65,C66,C67,C69,C7,C70,C71,C74,C75,C77,C79,C80,C81,C82,C86,C87,C9,D10,D11,D2,D3,D4,D6,D7,D8,D9
`Chr3:52937766`	`T`	`TAC`	2bp_insertion	frameshift_variant	174	A10,A14,A15,A16,A18,A19,A2,A20,A21,A23,A3,A4,A8,A9,B10,B100,B102,B103,B104,B106,B107,B108,B109,B11,B110,B111,B115,B117,B118,B119,B12,B120,B123,B125,B127,B128,B129,B13,B130,B131,B132,B133,B134,B136,B137,B138,B139,B14,B140,B15,B20,B21,B22,B25,B26,B27,B28,B29,B30,B33,B35,B37,B38,B39,B4,B40,B42,B43,B45,B48,B5,B50,B51,B54,B55,B56,B57,B58,B60,B61,B62,B64,B65,B66,B67,B68,B70,B71,B73,B75,B76,B77,B78,B79,B83,B86,B88,B89,B9,B90,B91,B93,B94,B95,B96,B98,B99,C10,C11,C12,C14,C15,C16,C17,C18,C19,C21,C23,C25,C26,C27,C30,C31,C32,C33,C34,C37,C39,C40,C42,C44,C47,C48,C49,C5,C51,C52,C53,C54,C55,C56,C57,C59,C6,C60,C62,C63,C64,C65,C66,C67,C69,C7,C70,C71,C74,C75,C77,C79,C80,C81,C82,C86,C87,C9,D10,D11,D2,D3,D4,D6,D7,D8,D9
`Chr3:52937780`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A22
`Chr3:52940751`	`AAG`	`A`	2bp_deletion	frameshift_variant	227	A1,A10,A11,A13,A15,A16,A18,A19,A2,A20,A21,A22,A23,A24,A25,A3,A4,A5,A6,A7,A8,A9,B1,B100,B101,B102,B103,B104,B105,B106,B107,B108,B109,B11,B111,B112,B113,B114,B115,B117,B118,B119,B12,B120,B121,B122,B123,B124,B125,B126,B127,B128,B13,B130,B131,B132,B133,B134,B135,B136,B139,B14,B140,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B24,B25,B26,B27,B28,B29,B3,B30,B31,B32,B34,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B51,B52,B53,B54,B55,B57,B58,B59,B6,B62,B63,B65,B66,B67,B68,B69,B70,B71,B72,B73,B74,B75,B76,B77,B78,B79,B8,B80,B81,B82,B84,B85,B86,B87,B88,B89,B90,B91,B92,B93,B94,B95,B96,B97,B98,B99,C1,C10,C11,C12,C13,C14,C16,C17,C18,C19,C20,C21,C22,C23,C24,C25,C26,C27,C28,C3,C30,C31,C34,C35,C36,C37,C39,C4,C40,C42,C43,C45,C46,C48,C49,C5,C51,C52,C54,C55,C56,C57,C58,C6,C60,C61,C62,C64,C65,C66,C67,C68,C69,C70,C71,C72,C73,C74,C76,C77,C78,C79,C80,C81,C82,C83,C84,C86,C87,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9
`Chr3:52940755`	`A`	`ATG`	2bp_insertion	frameshift_variant	226	A1,A10,A11,A13,A15,A16,A18,A19,A2,A20,A21,A22,A23,A24,A25,A3,A4,A5,A6,A7,A8,A9,B1,B100,B101,B102,B103,B104,B105,B106,B107,B108,B109,B11,B111,B112,B113,B114,B115,B117,B118,B119,B12,B121,B122,B123,B124,B125,B126,B127,B128,B13,B130,B131,B132,B133,B134,B135,B136,B139,B14,B140,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B24,B25,B26,B27,B28,B29,B3,B30,B31,B32,B34,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B51,B52,B53,B54,B55,B57,B58,B59,B6,B62,B63,B65,B66,B67,B68,B69,B70,B71,B72,B73,B74,B75,B76,B77,B78,B79,B8,B80,B81,B82,B84,B85,B86,B87,B88,B89,B90,B91,B92,B93,B94,B95,B96,B97,B98,B99,C1,C10,C11,C12,C13,C14,C16,C17,C18,C19,C20,C21,C22,C23,C24,C25,C26,C27,C28,C3,C30,C31,C34,C35,C36,C37,C39,C4,C40,C42,C43,C45,C46,C48,C49,C5,C51,C52,C54,C55,C56,C57,C58,C6,C60,C61,C62,C64,C65,C66,C67,C68,C69,C70,C71,C72,C73,C74,C76,C77,C78,C79,C80,C81,C82,C83,C84,C86,C87,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9
`Chr3:52943120`	`C`	`T`	EMS_canonical_SNV	stop_gained	5	A23,B61,B93,C16,C39
`Chr3:52943120`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A23,B61,B93,C16,C39
`Chr3:52943153`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C22,C56
`Chr3:52943348`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B34,B57,B63,C86
`Chr3:52943369`	`C`	`T`	EMS_canonical_SNV	stop_gained	6	B117,B3,B45,B9,C34,C41
`Chr3:52943883`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B113,B45,B86,C34,C67
`Chr3:52943884`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B113,B45,B86,C34,C67

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798260.1

415 aa

208

415

Solute_trans_a

PF03619 Solute_trans_a 7-266 aa

XP_057798261.1

415 aa

208

415

Solute_trans_a

PF03619 Solute_trans_a 7-266 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798260.1`	Pfam	`PF03619`	Solute_trans_a	Family	7	266	1.3e-89	300.8	Organic solute transporter Ostalpha
`XP_057798261.1`	Pfam	`PF03619`	Solute_trans_a	Family	7	266	1.3e-89	300.8	Organic solute transporter Ostalpha

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057942277.1
TTTTTATCCTTTCAAGTTTGCAATAAATCTCATTTATGTTCCCAACTCCTTCCCTAACTCAAAAATAAAATTTCGATTATCATAATTCAAATGATAATCGAACGAAAAAGTGAATTGATTTGATTGAGCAGAGCAGAAAAATCTGCGTATATTTGAAGCCGCCATTATTTGCCAGTCTGGCCCAAGGTGTCCTCCCCCGCCAGCATTCCTACAGCGCAAGAAGTTATCCTTTGCCGTGAATGTTTAAACCAATCCGGCAA...

XM_057942278.1
TTGCAATAAATCTCATTTATGTTCCCAACTCCTTCCCTAACTCAAAAATAAAATTTCGATTATCATAATTCAAATGATAATCGAACGAAAAAGTGAATTGATTTGATTGAGCAGAGCAGAAAAATCTGCGTATATTTGAAGCCGCCATTATTTGCCAGTCTGGCCCAAGGTGTCCTCCCCCGCCAGCATTCCTACAGCGCAAGAAGTTATCCTTTGCCGTGAATGTTTAAACCAATCCGGCAATCCCACTTCTTGCTATT...

CDS

2 records

下载 CDS FASTA

LOC131014343
ATGGGGCCAATATACTACATTCTGATAGCATTGCCTTGTACAATCGGCGCAATGACATTGGCAGTTCTCCACATTTACAAACATCTTTTGAATTATACTGAGCCCACATATCAGAGATACATCGTCCGTATTATCTTTATGGTTCCTGTTTATGCATTGATGTCTTTCTTATCCCTGGTCCTAAACAAAAGCACAATTTACTTCAATTCAATAAGAGAAATGTATGAAGCATGGGTCATCTATAATTTTTTGTCACTGTG...

Protein

2 records

下载 Protein FASTA

XP_057798260.1
MGPIYYILIALPCTIGAMTLAVLHIYKHLLNYTEPTYQRYIVRIIFMVPVYALMSFLSLVLNKSTIYFNSIREMYEAWVIYNFLSLCLAWVGGPGAVVVSLSGKVLQPNWCLMTCCFPPIPLDGRFIRRCKQGCLQFVILKPILVIVTLMLYAKGKYEDGNFNPRQSYLYLTIIYTISYSMALYALALFYVACRDLLQPFNPVPKFIIIKSVVFLTYWQGVLVFLAAKSQLIKDTTEAAEFQNFIICVEMLIAAIGHLYA...

XP_057798261.1
MGPIYYILIALPCTIGAMTLAVLHIYKHLLNYTEPTYQRYIVRIIFMVPVYALMSFLSLVLNKSTIYFNSIREMYEAWVIYNFLSLCLAWVGGPGAVVVSLSGKVLQPNWCLMTCCFPPIPLDGRFIRRCKQGCLQFVILKPILVIVTLMLYAKGKYEDGNFNPRQSYLYLTIIYTISYSMALYALALFYVACRDLLQPFNPVPKFIIIKSVVFLTYWQGVLVFLAAKSQLIKDTTEAAEFQNFIICVEMLIAAIGHLYA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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