当前解析结果
SmilChr03G003459| 统一新 Gene ID | SmilChr03G003459 |
|---|---|
| 名称 | SmilChr03G003459 |
| 描述 | phytochrome A |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 52970975 - 52976716 / + |
| NCBI Gene ID | LOC131014346 |
|---|---|
| GeneID | 131014346 |
| locus_tag | - |
| NCBI Name | LOC131014346 |
| 原始查询 | SmilChr03G003459 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | phytochrome A |
| 产物 | phytochrome A |
| Arabidopsis | AT1G09570 (PHYA)phytochrome A [Source:NCBI gene (formerly Entrezgene);Acc:837483] identity=75.6; qcov=1; evalue=0; confidence=high |
| Rice | Os03g0719800 (PHYA)- identity=64.9; qcov=0.986; evalue=0; confidence=high |
| GO | GO:0000155 (phosphorelay sensor kinase activity); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription); GO:0009584 (detection of visible light); GO:0009585 (red, far-red light phototransduction); GO:0009881 (photoreceptor activity); GO:0017006 (protein-tetrapyrrole linkage); GO:0042803 (protein homodimerization activity) |
| KEGG | smil04712 (Circadian rhythm - plant - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00360 (PHY); PF00512 (HisKA); PF00989 (PAS); PF01590 (GAF); PF02518 (HATPase_c); PF08446 (PAS_2); PF08448 (PAS_4) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014346 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057798264.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057798264.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057798264.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057798264.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057798264.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:52972102 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | B32 |
Chr3:52972102 |
GA |
G |
1bp_deletion | CDS_variant | 1 | B32 |
Chr3:52972443 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B51 |
Chr3:52972521 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B113 |
Chr3:52972765 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr3:52972878 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B9 |
Chr3:52973208 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B133,D11 |
Chr3:52973307 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A24,B82 |
Chr3:52973370 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B9 |
Chr3:52973699 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr3:52973790 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C73 |
Chr3:52975326 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057798264.1PF08446
PAS_2 65-181 aa
PF01590
GAF 215-394 aa
PF00360
PHY 408-582 aa
PF00989
PAS 614-728 aa
PF08448
PAS_4 621-732 aa
PF00989
PAS 744-866 aa
PF00512
HisKA 889-947 aa
PF02518
HATPase_c 1000-1111 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798264.1 |
Pfam | PF08446 |
PAS_2 | Domain | 65 | 181 | 4e-36 | 124.7 | PAS fold |
XP_057798264.1 |
Pfam | PF01590 |
GAF | Domain | 215 | 394 | 4.5e-18 | 66.8 | GAF domain |
XP_057798264.1 |
Pfam | PF00360 |
PHY | Domain | 408 | 582 | 1.9e-54 | 184.5 | Phytochrome region |
XP_057798264.1 |
Pfam | PF00989 |
PAS | Domain | 614 | 728 | 1.2e-41 | 141.9 | PAS fold |
XP_057798264.1 |
Pfam | PF08448 |
PAS_4 | Domain | 621 | 732 | 1.7e-07 | 32.1 | PAS fold |
XP_057798264.1 |
Pfam | PF00989 |
PAS | Domain | 744 | 866 | 1.2e-41 | 141.9 | PAS fold |
XP_057798264.1 |
Pfam | PF00512 |
HisKA | Domain | 889 | 947 | 1.4e-09 | 38.6 | His Kinase A (phospho-acceptor) domain |
XP_057798264.1 |
Pfam | PF02518 |
HATPase_c | Domain | 1000 | 1111 | 2.9e-11 | 44.5 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。