当前解析结果
SmilChr03G003470| 统一新 Gene ID | SmilChr03G003470 |
|---|---|
| 名称 | SmilChr03G003470 |
| 描述 | uncharacterized SmilChr03G003470 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 53164961 - 53171918 / + |
| NCBI Gene ID | LOC131014358 |
|---|---|
| GeneID | 131014358 |
| locus_tag | - |
| NCBI Name | LOC131014358 |
| 原始查询 | SmilChr03G003470 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3768859]; symbol=MUG7; hit=AT3G05850; species=arabidopsis; confidence=high |
| 产物 | MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3768859]; symbol=MUG7; hit=AT3G05850; species=arabidopsis; confidence=high |
| Arabidopsis | AT3G05850 (MUG7)MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3768859] identity=62.2; qcov=1.01; evalue=0; confidence=high |
| Rice | Os06g0632700- identity=40.8; qcov=0.996; evalue=0; confidence=medium |
| GO | GO:0005515 (protein binding); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00564 (PB1); PF03108 (DBD_Tnp_Mut); PF04434 (SWIM); PF10551 (MULE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014358 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057798294.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057798294.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057798294.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057798294.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057798294.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:53166425 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A24,A9,B82 |
Chr3:53166470 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B133,B91,C16,C50,D7 |
Chr3:53166693 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,B114 |
Chr3:53166723 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B129,B59,B74,C9 |
Chr3:53166745 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B129,B59,C9 |
Chr3:53166909 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A8,C47,C8 |
Chr3:53166981 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B15,B62,C18,C2,C80 |
Chr3:53167212 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A24,A9,B82 |
Chr3:53167293 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A24,A9,B82 |
Chr3:53167620 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B133,B91,C16,C50,D7 |
Chr3:53167840 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B125,C73 |
Chr3:53167893 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A21,B35,B66,C45,D1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057798294.1PF00564
PB1 24-93 aa
PF03108
DBD_Tnp_Mut 210-274 aa
PF10551
MULE 405-498 aa
PF04434
SWIM 659-688 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798294.1 |
Pfam | PF00564 |
PB1 | Domain | 24 | 93 | 4e-11 | 43.4 | PB1 domain |
XP_057798294.1 |
Pfam | PF03108 |
DBD_Tnp_Mut | Family | 210 | 274 | 3.7e-31 | 107.3 | MuDR family transposase |
XP_057798294.1 |
Pfam | PF10551 |
MULE | Domain | 405 | 498 | 2.4e-14 | 54.2 | MULE transposase domain |
XP_057798294.1 |
Pfam | PF04434 |
SWIM | Domain | 659 | 688 | 4.6e-08 | 33.1 | SWIM zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。