当前解析结果
SmilChr03G003472| 统一新 Gene ID | SmilChr03G003472 |
|---|---|
| 名称 | SmilChr03G003472 |
| 描述 | uncharacterized SmilChr03G003472 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 53204994 - 53209670 / - |
| NCBI Gene ID | LOC131014360 |
|---|---|
| GeneID | 131014360 |
| locus_tag | - |
| NCBI Name | LOC131014360 |
| 原始查询 | SmilChr03G003472 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Putative endonuclease or glycosyl hydrolase [Source:NCBI gene (formerly Entrezgene);Acc:825393]; symbol=AT3G62200; hit=AT3G62200; species=arabidopsis; confidence=high |
| 产物 | Putative endonuclease or glycosyl hydrolase [Source:NCBI gene (formerly Entrezgene);Acc:825393]; symbol=AT3G62200; hit=AT3G62200; species=arabidopsis; confidence=high |
| Arabidopsis | AT3G62200 (AT3G62200)Putative endonuclease or glycosyl hydrolase [Source:NCBI gene (formerly Entrezgene);Acc:825393] identity=46.6; qcov=1; evalue=1.12e-176; confidence=high |
| Rice | Os07g0637200 (OJ1136_D11.125)- identity=58.3; qcov=0.378; evalue=7.7e-76; confidence=low |
| GO | GO:0004540 (RNA nuclease activity); GO:0005777 (peroxisome); GO:0010468 (regulation of gene expression) |
| KEGG | - |
| Pfam | PF01936 (NYN); PF14418 (OHA); PF24620 (DUF7625) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014360 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057798296.1 |
| 2 | Cytoplasmic granule | 细胞质颗粒 | 0.60000 | XP_057798296.1 |
| 3 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 0.60000 | XP_057798296.1 |
| 4 | Nucleus | 细胞核 | 0.40000 | XP_057798296.1 |
| 5 | P-body | P-body | 0.40000 | XP_057798296.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:53206861 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B11,B79,C45,D3 |
Chr3:53206863 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C17,C4 |
Chr3:53206974 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C73 |
Chr3:53206981 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A2 |
Chr3:53206990 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A15,A6,B27,B4,C55 |
Chr3:53207114 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:53207144 |
G |
GC |
1bp_insertion | frameshift_variant | 3 | B86,C67,C69 |
Chr3:53207144 |
G |
GC |
1bp_insertion | CDS_variant | 3 | B86,C67,C69 |
Chr3:53207249 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B81 |
Chr3:53207249 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B81 |
Chr3:53207298 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B15,B62,C18,C2,C80 |
Chr3:53209033 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B129,B59,C9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057798296.1PF01936
NYN 27-163 aa
PF24620
DUF7625 467-559 aa
PF14418
OHA 587-642 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798296.1 |
Pfam | PF01936 |
NYN | Domain | 27 | 163 | 1.3e-28 | 101.0 | NYN domain |
XP_057798296.1 |
Pfam | PF24620 |
DUF7625 | Domain | 467 | 559 | 3.1e-46 | 156.1 | Domain of unknown function (DUF7625) |
XP_057798296.1 |
Pfam | PF14418 |
OHA | Domain | 587 | 642 | 2.8e-13 | 50.2 | OST-HTH Associated domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。