当前解析结果
SmilChr03G003475| 统一新 Gene ID | SmilChr03G003475 |
|---|---|
| 名称 | SmilChr03G003475 |
| 描述 | pleiotropic drug resistance protein 3-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 53276314 - 53290805 / + |
| NCBI Gene ID | LOC131014363 |
|---|---|
| GeneID | 131014363 |
| locus_tag | - |
| NCBI Name | LOC131014363 |
| 原始查询 | SmilChr03G003475 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pleiotropic drug resistance protein 3-like |
| 产物 | pleiotropic drug resistance protein 3-like |
| Arabidopsis | AT3G53480 (ABCG37)pleiotropic drug resistance 9 [Source:NCBI gene (formerly Entrezgene);Acc:824516] identity=62.4; qcov=1; evalue=0; confidence=high |
| Rice | Os12g0512700 (OsABCG50)- identity=54.9; qcov=1; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0140359 (ABC-type transporter activity) |
| KEGG | smil02010 (ABC transporters - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00005 (ABC_tran); PF01061 (ABC2_membrane); PF08370 (PDR_assoc); PF19055 (ABC2_membrane_7) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014363 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057798299.1 |
| 2 | Vacuole membrane | 液泡膜 | 0.80000 | XP_057798299.1 |
| 3 | Vacuole | 液泡 | 0.60000 | XP_057798299.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057798299.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057798299.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:53276602 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B133 |
Chr3:53284279 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B3 |
Chr3:53284498 |
CA |
C |
1bp_deletion | frameshift_variant | 13 | A5,A7,B110,B27,B40,B50,B60,B77,B99,C14,C25,C44,C5 |
Chr3:53285183 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:53285292 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A4,B64,B84,C80,C84 |
Chr3:53285453 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B140,C72 |
Chr3:53285523 |
TAC |
T |
2bp_deletion | frameshift_variant | 11 | B104,B127,B128,B14,B58,B80,B81,B82,C83,D1,D6 |
Chr3:53285567 |
TG |
T |
1bp_deletion | frameshift_variant | 23 | A18,A6,B104,B121,B127,B128,B133,B14,B2,B30,B43,B72,B76,B78,B80,B81,B82,B98,C13,C28,C71,C83,D6 |
Chr3:53285570 |
T |
TA |
1bp_insertion | frameshift_variant | 21 | A18,A6,B104,B121,B127,B128,B133,B14,B2,B43,B72,B76,B78,B81,B82,B98,C13,C28,C71,C83,D6 |
Chr3:53285854 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B49,D10 |
Chr3:53285886 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr3:53285946 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057798299.1PF00005
ABC_tran 67-248 aa
PF19055
ABC2_membrane_7 281-328 aa
PF01061
ABC2_membrane 402-613 aa
PF08370
PDR_assoc 618-677 aa
PF00005
ABC_tran 763-915 aa
PF01061
ABC2_membrane 1061-1274 aa
XP_057798300.1PF00005
ABC_tran 67-248 aa
PF19055
ABC2_membrane_7 281-328 aa
PF01061
ABC2_membrane 402-613 aa
PF08370
PDR_assoc 618-677 aa
PF00005
ABC_tran 755-907 aa
PF01061
ABC2_membrane 1053-1266 aa
XP_057798301.1PF00005
ABC_tran 2-171 aa
PF19055
ABC2_membrane_7 204-251 aa
PF01061
ABC2_membrane 325-536 aa
PF08370
PDR_assoc 541-600 aa
PF00005
ABC_tran 686-838 aa
PF01061
ABC2_membrane 984-1197 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798299.1 |
Pfam | PF00005 |
ABC_tran | Domain | 67 | 248 | 7.5e-41 | 140.7 | ABC transporter |
XP_057798299.1 |
Pfam | PF19055 |
ABC2_membrane_7 | Family | 281 | 328 | 8.8e-13 | 48.6 | ABC-2 type transporter |
XP_057798299.1 |
Pfam | PF01061 |
ABC2_membrane | Domain | 402 | 613 | 7.7e-96 | 320.4 | ABC-2 type transporter |
XP_057798299.1 |
Pfam | PF08370 |
PDR_assoc | Family | 618 | 677 | 1.7e-21 | 76.4 | Plant PDR ABC transporter associated |
XP_057798299.1 |
Pfam | PF00005 |
ABC_tran | Domain | 763 | 915 | 7.5e-41 | 140.7 | ABC transporter |
XP_057798299.1 |
Pfam | PF01061 |
ABC2_membrane | Domain | 1061 | 1274 | 7.7e-96 | 320.4 | ABC-2 type transporter |
XP_057798300.1 |
Pfam | PF00005 |
ABC_tran | Domain | 67 | 248 | 7.3e-41 | 140.7 | ABC transporter |
XP_057798300.1 |
Pfam | PF19055 |
ABC2_membrane_7 | Family | 281 | 328 | 8.6e-13 | 48.6 | ABC-2 type transporter |
XP_057798300.1 |
Pfam | PF01061 |
ABC2_membrane | Domain | 402 | 613 | 7.6e-96 | 320.4 | ABC-2 type transporter |
XP_057798300.1 |
Pfam | PF08370 |
PDR_assoc | Family | 618 | 677 | 1.7e-21 | 76.4 | Plant PDR ABC transporter associated |
XP_057798300.1 |
Pfam | PF00005 |
ABC_tran | Domain | 755 | 907 | 7.3e-41 | 140.7 | ABC transporter |
XP_057798300.1 |
Pfam | PF01061 |
ABC2_membrane | Domain | 1053 | 1266 | 7.6e-96 | 320.4 | ABC-2 type transporter |
XP_057798301.1 |
Pfam | PF00005 |
ABC_tran | Domain | 2 | 171 | 6.3e-38 | 131.2 | ABC transporter |
XP_057798301.1 |
Pfam | PF19055 |
ABC2_membrane_7 | Family | 204 | 251 | 5.7e-13 | 49.2 | ABC-2 type transporter |
XP_057798301.1 |
Pfam | PF01061 |
ABC2_membrane | Domain | 325 | 536 | 6.2e-96 | 320.7 | ABC-2 type transporter |
XP_057798301.1 |
Pfam | PF08370 |
PDR_assoc | Family | 541 | 600 | 1.6e-21 | 76.5 | Plant PDR ABC transporter associated |
XP_057798301.1 |
Pfam | PF00005 |
ABC_tran | Domain | 686 | 838 | 6.3e-38 | 131.2 | ABC transporter |
XP_057798301.1 |
Pfam | PF01061 |
ABC2_membrane | Domain | 984 | 1197 | 6.2e-96 | 320.7 | ABC-2 type transporter |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。