当前解析结果
SmilChr03G003483| 统一新 Gene ID | SmilChr03G003483 |
|---|---|
| 名称 | SmilChr03G003483 |
| 描述 | signal recognition particle 43 kDa protein, chloroplastic |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 53402869 - 53404179 / - |
| NCBI Gene ID | LOC131014372 |
|---|---|
| GeneID | 131014372 |
| locus_tag | - |
| NCBI Name | LOC131014372 |
| 原始查询 | SmilChr03G003483 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | signal recognition particle 43 kDa protein, chloroplastic |
| 产物 | signal recognition particle 43 kDa protein%2C chloroplastic |
| Arabidopsis | AT2G47450 (CAO)chloroplast signal recognition particle component (CAO) [Source:NCBI gene (formerly Entrezgene);Acc:819358] identity=65.2; qcov=0.812; evalue=8.58e-136; confidence=high |
| Rice | Os03g0131900 (OscpSRP43)- identity=51.8; qcov=1.02; evalue=8.91e-113; confidence=high |
| GO | GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm) |
| KEGG | - |
| Pfam | PF00023 (Ank); PF00385 (Chromo); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13857 (Ank_5) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014372 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057798314.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 1.00000 | XP_057798314.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057798314.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057798314.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057798314.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:53403240 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B74,D10 |
Chr3:53403245 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C24 |
Chr3:53403263 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B12,B140,C8 |
Chr3:53403278 |
C |
CT |
1bp_insertion | frameshift_variant | 5 | A13,A4,C34,C4,D4 |
Chr3:53403278 |
C |
CT |
1bp_insertion | CDS_variant | 5 | A13,A4,C34,C4,D4 |
Chr3:53403282 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B140,C8 |
Chr3:53403284 |
C |
CAG |
2bp_insertion | frameshift_variant | 5 | A13,A4,C34,C4,D4 |
Chr3:53403284 |
C |
CAG |
2bp_insertion | CDS_variant | 5 | A13,A4,C34,C4,D4 |
Chr3:53403290 |
CCA |
C |
2bp_deletion | frameshift_variant | 5 | A13,A4,C34,C4,D4 |
Chr3:53403290 |
CCA |
C |
2bp_deletion | CDS_variant | 5 | A13,A4,C34,C4,D4 |
Chr3:53403293 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A13,A4,C34,C4,D4 |
Chr3:53403297 |
CG |
C |
1bp_deletion | frameshift_variant | 4 | A13,A4,C34,C4 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057798314.1PF12796
Ank_2 115-181 aa
PF00023
Ank 150-181 aa
PF13637
Ank_4 162-193 aa
PF13857
Ank_5 170-225 aa
PF13606
Ank_3 185-212 aa
PF00023
Ank 185-215 aa
PF00385
Chromo 309-354 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798314.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 115 | 181 | 7.7e-16 | 59.2 | Ankyrin repeats (3 copies) |
XP_057798314.1 |
Pfam | PF00023 |
Ank | Repeat | 150 | 181 | 3.5e-17 | 62.3 | Ankyrin repeat |
XP_057798314.1 |
Pfam | PF13637 |
Ank_4 | Repeat | 162 | 193 | 2.7e-15 | 56.8 | Ankyrin repeats (many copies) |
XP_057798314.1 |
Pfam | PF13857 |
Ank_5 | Repeat | 170 | 225 | 2.2e-11 | 44.6 | Ankyrin repeats (many copies) |
XP_057798314.1 |
Pfam | PF13606 |
Ank_3 | Repeat | 185 | 212 | 5.9e-10 | 39.1 | Ankyrin repeat |
XP_057798314.1 |
Pfam | PF00023 |
Ank | Repeat | 185 | 215 | 3.5e-17 | 62.3 | Ankyrin repeat |
XP_057798314.1 |
Pfam | PF00385 |
Chromo | Domain | 309 | 354 | 8.2e-20 | 71.2 | Chromo (CHRromatin Organisation MOdifier) domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。