当前解析结果
SmilChr03G003485| 统一新 Gene ID | SmilChr03G003485 |
|---|---|
| 名称 | SmilChr03G003485 |
| 描述 | light-inducible protein CPRF2-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 53425898 - 53431089 / - |
| NCBI Gene ID | LOC131014375 |
|---|---|
| GeneID | 131014375 |
| locus_tag | - |
| NCBI Name | LOC131014375 |
| 原始查询 | SmilChr03G003485 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | light-inducible protein CPRF2-like |
| 产物 | light-inducible protein CPRF2-like |
| Arabidopsis | AT5G28770 (BZO2H3)bZIP transcription factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:832990] identity=38.4; qcov=0.981; evalue=1.13e-56; confidence=medium |
| Rice | Os03g0796900 (REB)- identity=41.3; qcov=1.05; evalue=1.79e-67; confidence=medium |
| GO | GO:0003700 (DNA-binding transcription factor activity); GO:0006355 (regulation of DNA-templated transcription) |
| KEGG | - |
| Pfam | PF00170 (bZIP_1); PF07716 (bZIP_2); PF12498 (bZIP_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014375 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057798317.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057798317.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057798317.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057798317.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057798317.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:53426156 |
CAG |
C |
2bp_deletion | frameshift_variant | 4 | B65,C43,C51,D5 |
Chr3:53426156 |
CAG |
C |
2bp_deletion | CDS_variant | 4 | B65,C43,C51,D5 |
Chr3:53426196 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B65,C43,C51,D5 |
Chr3:53426247 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B102,C60 |
Chr3:53426317 |
C |
CCT |
2bp_insertion | frameshift_variant | 16 | A23,B107,B24,B28,B40,B45,B54,B62,B94,C27,C48,C63,C78,C79,C84,D3 |
Chr3:53426318 |
TAA |
T |
2bp_deletion | frameshift_variant | 16 | A23,B107,B24,B28,B40,B45,B54,B62,B94,C27,C48,C63,C78,C79,C84,D3 |
Chr3:53426412 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr3:53426424 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C54 |
Chr3:53426430 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B140,C72 |
Chr3:53428749 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B117 |
Chr3:53428777 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B63,B83 |
Chr3:53430130 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B12,B123,B55,C37 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057798317.1PF07716
bZIP_2 216-262 aa
PF00170
bZIP_1 217-270 aa
PF12498
bZIP_C 285-400 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798317.1 |
Pfam | PF07716 |
bZIP_2 | Coiled-coil | 216 | 262 | 3e-08 | 34.3 | Basic region leucine zipper |
XP_057798317.1 |
Pfam | PF00170 |
bZIP_1 | Coiled-coil | 217 | 270 | 5.7e-12 | 46.3 | bZIP transcription factor |
XP_057798317.1 |
Pfam | PF12498 |
bZIP_C | Family | 285 | 400 | 7.4e-29 | 102.0 | Basic leucine-zipper C terminal |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。